Open science resources, workflows, and tools for exploring ASAP CRN Cloud data.
The ASAP Collaborative Research Network (CRN) is the first of its kind to foster an environment that facilitates the rapid and free exchange of scientific ideas to spark new discoveries for Parkinson’s disease (PD). The CRN is an international, multidisciplinary, and multi-institutional network of collaborating investigators working to address high-priority basic science questions. Teams are awarded grant funding through request for applications in partnership with the Michael J. Fox Foundation for Parkinson’s Research (MJFF).
| Goal | Resource |
|---|---|
| Explore available datasets and collections | CRN Cloud Explorer |
| Run tutorials and sample notebooks | ASAP CRN Learning Lab |
| Learn more about the research network | ASAP CRN Website |
| Develop your own analysis | ASAP CRN Reference Workspace in Verily Workbench |
Hands-on tutorials, sample notebooks, and reproducible examples for researchers getting started with CRN Cloud data.
| Repository | Description |
|---|---|
asap-crn-learning-lab |
Tutorials, sample notebooks, and reproducible workflows for exploring CRN Cloud data in Verily Workbench |
Public records and automation resources that describe CRN Cloud releases, data collections, and orchestration workflows.
| Repository | Description |
|---|---|
cloud-datasets |
Versioned CRN Cloud Dataset summary |
cloud-releases |
Versioned CRN Cloud release summary |
cloud-collections |
Versioned CRN Cloud data Collections summary |
WDL workflows used to curate and harmonize CRN datasets, including postmortem-derived brain sequencing resources.
| Repository | Description |
|---|---|
pmdbs-sc-rnaseq-wf |
PMDBS single-cell RNA-seq curation workflow |
bulk-rnaseq-wf |
Bulk RNA-seq curation workflow |
spatial-transcriptomics-wf |
Spatial transcriptomics harmonization workflow |
wf-common |
Shared WDL tasks, utilities, and workflow components |
Reusable and operational tools that support CRN Cloud workflows, metadata validation, and reproducibility.
| Repository | Description |
|---|---|
crn-utils |
Utility functions used across CRN Cloud workflows and resources |
crn-meta-validate |
Streamlit app for validating CRN metadata against expected formats and schemas |
cloud-orchestration |
Workflows and automation for coordinating CRN Cloud release provenance archive |
Some repositories support the internal mechanics of building and maintaining the CRN Cloud. These remain private because they may contain operational configuration or internal process tooling.
Scientific outputs, workflow methods, release records, and public provenance are captured in the public repositories listed above.
| Repository | Description |
|---|---|
asap-crn-cloud-release-resources |
Internal release-resource management |
asap-crn-cloud-dataset-metadata |
Internal dataset metadata operations |
| I want to... | Start with... |
|---|---|
| Find CRN datasets | CRN Cloud Explorer |
| Run example analyses | ASAP CRN Learning Lab |
| Understand data releases | cloud-releases |
| Inspect data collections | cloud-collections |
| Review curation workflows | pmdbs-sc-rnaseq-wf and pmdbs-bulk-rnaseq-wf |
| Explore validation and utility tools | crn-utils and crn-meta-validate |