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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 374 160

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 25 15

Repositories

Showing 10 of 459 repositories
  • microns_tutorial Public

    MICrONS databook and analysis tutorials

    AllenInstitute/microns_tutorial’s past year of commit activity
    HTML 7 2 3 0 Updated Jan 6, 2026
  • neuron-proofreader Public

    NeuronProofreader is a Python library for automated proofreading of split and merge mistakes in neuron reconstructions.

    AllenInstitute/neuron-proofreader’s past year of commit activity
    Python 6 MIT 0 0 0 Updated Jan 6, 2026
  • np_workflows Public
    AllenInstitute/np_workflows’s past year of commit activity
    Jupyter Notebook 0 3 2 0 Updated Jan 6, 2026
  • np_notebooks Public
    AllenInstitute/np_notebooks’s past year of commit activity
    Jupyter Notebook 0 3 0 0 Updated Jan 6, 2026
  • vis Public

    Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats

    AllenInstitute/vis’s past year of commit activity
    TypeScript 6 BSD-3-Clause 1 11 7 Updated Jan 6, 2026
  • aibs-informatics-aws-utils Public

    Library of generic Python AWS utils used by the AIBS Informatics "Marmot" team

    AllenInstitute/aibs-informatics-aws-utils’s past year of commit activity
    Python 1 0 2 0 Updated Jan 6, 2026
  • deep_ccf_registration Public

    Arbitrary modality registration to CCFv3 using deep learning

    AllenInstitute/deep_ccf_registration’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 6, 2026
  • human_patchseq_excitatory Public
    AllenInstitute/human_patchseq_excitatory’s past year of commit activity
    Jupyter Notebook 0 BSD-2-Clause 0 0 0 Updated Jan 5, 2026
  • SEA_AD_CaH_spatial_transcriptomics Public
    AllenInstitute/SEA_AD_CaH_spatial_transcriptomics’s past year of commit activity
    Python 0 0 0 0 Updated Jan 5, 2026
  • ScientificSlideLibrary Public

    Scientific Slide Library landing page

    AllenInstitute/ScientificSlideLibrary’s past year of commit activity
    Python 0 0 0 0 Updated Jan 5, 2026
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