settings.ini

[MouseVolume]
dir=/Volumes/scratch/seg3d2_irtools/TestData/MouseVolume
image_ext=.tif
shrink=8
spacing=1.0
first_slice=1
last_slice=18
overlap_min=0.04
overlap_max=0.22

[test]
dir=/home/sci/brig/Downloads/testmultiple1
number_prefix=slice_
image_ext=.png
shrink=4
spacing=1.0
first_slice=5
last_slice=525
overlap_min=0.05
overlap_max=0.22
clahe_window_dim=2
clahe_shrink=2
pyramid_iters=50
pyramid_levels=2
min_peak=0.2
peak_threshold=0.2
tile_strategy=top_left_book

[Polson3319]
dir=/usr/sci/projects/msmg/data/Polson3319slices
outputDir=/Volumes/scratch/seg3d2_irtools/Polson3319
mosaic_ext=.mosaic
image_ext=.tif
stos_ext=.stos
shrink=8
first_slice=39
last_slice=247
overlap_min=0.1
overlap_max=0.22
spacing=1.0
pyramid_iters=50
clahe_window_dim=128
clahe_shrink=1
assemble_feathering_option=blend
volume_shrink=0
pyramid_levels=2
min_peak=0.2
peak_threshold=0.1