Dockerfile-ns

ARG BASE_CONTAINER=define_as_build_arg
FROM $BASE_CONTAINER
LABEL MAINTAINER="CSEL Ops <admin@cs.colorado.edu>"

ENV DEBIAN_FRONTEND noninteractive

##
## Install Julia packages commonly used
##

USER root

RUN julia -e 'import Pkg; Pkg.update()' && \
    julia -e 'import Pkg; Pkg.add("Plots")' && \
    julia -e 'import Pkg; Pkg.add("Zygote")' && \
    julia -e 'import Pkg; Pkg.add("ForwardDiff")' && \
    julia -e 'import Pkg; Pkg.add("Symbolics")' && \
    julia -e 'import Pkg; Pkg.add("SpecialMatrices")' && \
    julia -e 'import Pkg; Pkg.add("Calculus")' && \
    julia -e 'import Pkg; Pkg.add("FastGaussQuadrature")' && \
    julia -e 'import Pkg; Pkg.add("NLsolve")' && \
    julia -e 'import Pkg; Pkg.add("Polynomials")' && \
    julia -e 'import Pkg; Pkg.add("ProfileSVG")' && \
    julia -e 'import Pkg; Pkg.add("GLM")' && \
    julia -e 'import Pkg; Pkg.add("StatsModels")' && \
    julia -e 'import Pkg; Pkg.add("DataFrames")' && \
    julia -e 'import Pkg; Pkg.add("Roots")' && \
    julia -e 'import Pkg; Pkg.add("SparseArrays")' && \
    conda install -y gh --channel conda-forge && \
    chmod -R go+rx "${CONDA_DIR}/share/jupyter" && \
    rm -rf "${HOME}/.local" && \
    chown -R $NB_UID.$NB_GID "${JULIA_PKGDIR}" 

ARG OLD_DEPOT_PATH=${JULIA_DEPOT_PATH}
ENV CURR_JULIA_VERSION="v1.8"

ENV JULIA_DEPOT_PATH=:${OLD_DEPOT_PATH} \
    JULIA_LOAD_PATH=:${OLD_DEPOT_PATH}/environments/${CURR_JULIA_VERSION} \
    JULIA_NUM_PRECOMPILE_TASKS=2 

#COPY scripts/unset_var.sh /usr/local/bin/start-notebook.d/unset_var.sh
COPY scripts/create_dummy_project.sh /usr/local/bin/start-notebook.d/create_dummy_project.sh

#
RUN pip install jax 

RUN     rm -rf /home/jovyan  && \
        mkdir /home/jovyan && \
        chown $NB_UID:$NB_GID /home/jovyan

USER    $NB_UID