Dockerfile-swd

ARG BASE_CONTAINER=define_as_build_arg
FROM $BASE_CONTAINER
LABEL MAINTAINER="CSEL Ops <admin@cs.colorado.edu>"

USER root

RUN  DEBIAN_FRONTEND=noninteractive apt-get update && \
     DEBIAN_FRONTEND=noninteractive apt-get install -yq --no-install-recommends \
				    postgresql-client

##
## Geopython, XML
##
RUN	mamba install -c conda-forge  \
	conda-forge::gdal conda-forge:libgdal \
	conda-forge::lxml conda-forge:libiconv conda-forge::geopandas conda-forge::geoplot \
	conda-forge::folium conda-forge::pysal conda-forge::esda conda-forge::rasterio conda-forge::poppler \
	conda-forge::psycopg2 conda-forge::mysqlclient conda-forge::ipython-sql && \
	mamba clean -afy && \
	DEBIAN_FRONTEND=noninteractive apt-get update && \	
	DEBIAN_FRONTEND=noninteractive apt-get install -yq --no-install-recommends \
				       	        xqilla libxqilla-dev && \
	rm -rf /var/lib/apt/lists/* && \
	$CONDA_DIR/bin/pip install contextily libpysal mgwr mapclassify esda python-simplexquery pymysql
# Instal valgrind
RUN apt-get update \
 && DEBIAN_FRONTEND=noninteractive apt-get install -yq --no-install-recommends \
     valgrind  && \
     apt-get clean	

RUN     rm -rf /home/jovyan  && \
        mkdir /home/jovyan && \
        chown $NB_UID:$NB_GID /home/jovyan

USER    $NB_UID