diff --git a/.github/workflows/opencode-review.yml b/.github/workflows/opencode-review.yml index f1d30db9f..1b779a7e4 100644 --- a/.github/workflows/opencode-review.yml +++ b/.github/workflows/opencode-review.yml @@ -583,7 +583,7 @@ jobs: export R_LIBS_USER="${RUNNER_TEMP}/R-library" mkdir -p "$R_LIBS_USER" run_and_capture "R coverage tooling (covr/testthat)" \ - bash -c 'Rscript -e '\''repos <- "https://cloud.r-project.org"; lib <- Sys.getenv("R_LIBS_USER"); install_deps <- c("Depends", "Imports", "LinkingTo"); dir.create(lib, recursive = TRUE, showWarnings = FALSE); .libPaths(c(lib, .libPaths())); required <- c("covr", "testthat"); if (file.exists("DESCRIPTION")) { desc <- read.dcf("DESCRIPTION")[1, , drop = FALSE]; fields <- intersect(c("Depends", "Imports", "LinkingTo", "Suggests"), colnames(desc)); values <- as.character(desc[, fields, drop = TRUE]); values <- values[!is.na(values)]; package_deps <- trimws(gsub("\\s*\\([^)]*\\)", "", unlist(strsplit(paste(values, collapse = ","), ","), use.names = FALSE))); package_deps <- setdiff(package_deps[nzchar(package_deps)], "R"); required <- unique(c(required, package_deps)); }; for (pkg in required) if (!requireNamespace(pkg, quietly = TRUE)) install.packages(pkg, repos = repos, lib = lib, dependencies = install_deps); missing <- required[!vapply(required, requireNamespace, logical(1), quietly = TRUE)]; if (length(missing)) stop("R coverage tooling packages unavailable after install: ", paste(missing, collapse = ", "))'\'' || { echo "R coverage tooling install unavailable in coverage runner; deferring to required peer R CMD check evidence."; exit 0; }' + bash -c 'timeout 780 Rscript -e '\''user_repo <- "https://cloud.r-project.org"; codename <- tryCatch(sub("[[:space:]]+$", "", system2("lsb_release", "-cs", stdout = TRUE, stderr = FALSE)[1]), error = function(e) ""); if (length(codename) == 1 && !is.na(codename) && nzchar(codename)) { options(HTTPUserAgent = sprintf("R/%s R (%s)", getRversion(), paste(getRversion(), R.version$platform, R.version$arch, R.version$os))); repos <- c(sprintf("https://p3m.dev/cran/__linux__/%s/latest", codename), user_repo) } else { repos <- user_repo }; lib <- Sys.getenv("R_LIBS_USER"); install_deps <- c("Depends", "Imports", "LinkingTo"); dir.create(lib, recursive = TRUE, showWarnings = FALSE); .libPaths(c(lib, .libPaths())); required <- c("covr", "testthat"); if (file.exists("DESCRIPTION")) { desc <- read.dcf("DESCRIPTION")[1, , drop = FALSE]; fields <- intersect(c("Depends", "Imports", "LinkingTo"), colnames(desc)); values <- as.character(desc[, fields, drop = TRUE]); values <- values[!is.na(values)]; package_deps <- trimws(gsub("\\s*\\([^)]*\\)", "", unlist(strsplit(paste(values, collapse = ","), ","), use.names = FALSE))); package_deps <- setdiff(package_deps[nzchar(package_deps)], "R"); required <- unique(c(required, package_deps)); }; for (pkg in required) if (!requireNamespace(pkg, quietly = TRUE)) install.packages(pkg, repos = repos, lib = lib, dependencies = install_deps); missing <- required[!vapply(required, requireNamespace, logical(1), quietly = TRUE)]; if (length(missing)) stop("R coverage tooling packages unavailable after install: ", paste(missing, collapse = ", "))'\'' || { echo "R coverage tooling install unavailable or exceeded the runner time budget; deferring to required peer R CMD check evidence."; exit 0; }' if [ -f DESCRIPTION ]; then if [ -d tests/testthat ]; then run_and_capture "R package testthat suite" \