From cb6e804bc03e410401e19bc48a3fb03b2e1e3725 Mon Sep 17 00:00:00 2001 From: Lee Cooper Date: Fri, 17 Mar 2023 22:56:43 -0500 Subject: [PATCH 1/2] update pooch links - tensorflow --- example/tensorflow_stream.ipynb | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/example/tensorflow_stream.ipynb b/example/tensorflow_stream.ipynb index b34df5f..1f30b98 100644 --- a/example/tensorflow_stream.ipynb +++ b/example/tensorflow_stream.ipynb @@ -68,7 +68,7 @@ "# download whole slide image\n", "wsi_path = pooch.retrieve(\n", " fname=\"TCGA-AN-A0G0-01Z-00-DX1.svs\",\n", - " url=\"https://northwestern.box.com/shared/static/qelyzb45bigg6sqyumtj8kt2vwxztpzm\",\n", + " url=\"https://drive.google.com/uc?export=download&id=19agE_0cWY582szhOVxp9h3kozRfB4CvV&confirm=t&uuid=6f2d51e7-9366-4e98-abc7-4f77427dd02c&at=ALgDtswlqJJw1KU7P3Z1tZNcE01I:1679111148632\",\n", " known_hash=\"d046f952759ff6987374786768fc588740eef1e54e4e295a684f3bd356c8528f\",\n", " path=str(pooch.os_cache(\"pooch\")) + os.sep + \"wsi\",\n", ")\n", @@ -77,7 +77,7 @@ "# download binary mask image\n", "mask_path = pooch.retrieve(\n", " fname=\"TCGA-AN-A0G0-01Z-00-DX1.mask.png\",\n", - " url=\"https://northwestern.box.com/shared/static/2q13q2r83avqjz9glrpt3s3nop6uhi2i\",\n", + " url=\"https://drive.google.com/uc?export=download&id=17GOOHbL8Bo3933rdIui82akr7stbRfta\",\n", " known_hash=\"bb657ead9fd3b8284db6ecc1ca8a1efa57a0e9fd73d2ea63ce6053fbd3d65171\",\n", " path=str(pooch.os_cache(\"pooch\")) + os.sep + \"wsi\",\n", ")\n", @@ -313,7 +313,7 @@ "# download trained model.\n", "model_path = pooch.retrieve(\n", " fname=\"tcga_brca_model\",\n", - " url=\"https://northwestern.box.com/shared/static/4g6idrqlpvgxnsktz8pym5386njyvyb6\",\n", + " url=\"https://drive.google.com/uc?export=download&id=1KxB6iAn9j2Wp7oyFlV4T1Kli-mR8-35G&confirm=t&uuid=c5df8dfd-ed48-4cef-81a0-19df97677fe5&at=ALgDtswWzs0BEdkVNgFrp83p9NDO:1679111246793\",\n", " known_hash=\"b5b5444cc8874d17811a89261abeafd9b9603e7891a8b2a98d8f13e2846a6689\",\n", " path=str(pooch.os_cache(\"pooch\")) + os.sep + \"model\",\n", " processor=pooch.Unzip(),\n", @@ -431,9 +431,9 @@ ], "metadata": { "kernelspec": { - "display_name": "histomics_stream", + "display_name": "Python 3 (ipykernel)", "language": "python", - "name": "histomics_stream" + "name": "python3" }, "language_info": { "codemirror_mode": { @@ -445,7 +445,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.8.10" + "version": "3.9.13" } }, "nbformat": 4, From fa03f39542106aab72188fd968ee86ee0f612c9b Mon Sep 17 00:00:00 2001 From: Lee Cooper Date: Fri, 17 Mar 2023 22:59:16 -0500 Subject: [PATCH 2/2] update pooch links - pytorch --- example/pytorch_stream.ipynb | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/example/pytorch_stream.ipynb b/example/pytorch_stream.ipynb index dbc7e8a..646d0e4 100644 --- a/example/pytorch_stream.ipynb +++ b/example/pytorch_stream.ipynb @@ -68,7 +68,7 @@ "# download whole slide image\n", "wsi_path = pooch.retrieve(\n", " fname=\"TCGA-AN-A0G0-01Z-00-DX1.svs\",\n", - " url=\"https://northwestern.box.com/shared/static/qelyzb45bigg6sqyumtj8kt2vwxztpzm\",\n", + " url=\"https://drive.google.com/uc?export=download&id=19agE_0cWY582szhOVxp9h3kozRfB4CvV&confirm=t&uuid=6f2d51e7-9366-4e98-abc7-4f77427dd02c&at=ALgDtswlqJJw1KU7P3Z1tZNcE01I:1679111148632\",\n", " known_hash=\"d046f952759ff6987374786768fc588740eef1e54e4e295a684f3bd356c8528f\",\n", " path=str(pooch.os_cache(\"pooch\")) + os.sep + \"wsi\",\n", ")\n", @@ -77,7 +77,7 @@ "# download binary mask image\n", "mask_path = pooch.retrieve(\n", " fname=\"TCGA-AN-A0G0-01Z-00-DX1.mask.png\",\n", - " url=\"https://northwestern.box.com/shared/static/2q13q2r83avqjz9glrpt3s3nop6uhi2i\",\n", + " url=\"https://drive.google.com/uc?export=download&id=17GOOHbL8Bo3933rdIui82akr7stbRfta\",\n", " known_hash=\"bb657ead9fd3b8284db6ecc1ca8a1efa57a0e9fd73d2ea63ce6053fbd3d65171\",\n", " path=str(pooch.os_cache(\"pooch\")) + os.sep + \"wsi\",\n", ")\n", @@ -445,9 +445,9 @@ ], "metadata": { "kernelspec": { - "display_name": "histomics_stream", + "display_name": "Python 3 (ipykernel)", "language": "python", - "name": "histomics_stream" + "name": "python3" }, "language_info": { "codemirror_mode": { @@ -459,7 +459,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.8.10" + "version": "3.9.13" } }, "nbformat": 4,