diff --git a/Modules/Core/Common/src/itkGaussianDerivativeOperator.cxx b/Modules/Core/Common/src/itkGaussianDerivativeOperator.cxx
index afacd660850..a94588d3ae3 100644
--- a/Modules/Core/Common/src/itkGaussianDerivativeOperator.cxx
+++ b/Modules/Core/Common/src/itkGaussianDerivativeOperator.cxx
@@ -15,7 +15,7 @@
  *  limitations under the License.
  *
  *=========================================================================*/
-#include "../include/itkGaussianDerivativeOperator.h"
+#include "itkGaussianDerivativeOperator.h"
 
 namespace itk
 {
diff --git a/Modules/Core/QuadEdgeMesh/src/itkQuadEdgeMeshEulerOperatorFlipEdgeFunction.cxx b/Modules/Core/QuadEdgeMesh/src/itkQuadEdgeMeshEulerOperatorFlipEdgeFunction.cxx
index 2bcaa677666..0f6979523d2 100644
--- a/Modules/Core/QuadEdgeMesh/src/itkQuadEdgeMeshEulerOperatorFlipEdgeFunction.cxx
+++ b/Modules/Core/QuadEdgeMesh/src/itkQuadEdgeMeshEulerOperatorFlipEdgeFunction.cxx
@@ -15,7 +15,7 @@
  *  limitations under the License.
  *
  *=========================================================================*/
-#include "../include/itkQuadEdgeMeshEulerOperatorFlipEdgeFunction.h"
+#include "itkQuadEdgeMeshEulerOperatorFlipEdgeFunction.h"
 
 namespace itk
 {
diff --git a/Modules/Core/SpatialObjects/src/itkContourSpatialObject.cxx b/Modules/Core/SpatialObjects/src/itkContourSpatialObject.cxx
index 9a92d3e9006..58fa891930d 100644
--- a/Modules/Core/SpatialObjects/src/itkContourSpatialObject.cxx
+++ b/Modules/Core/SpatialObjects/src/itkContourSpatialObject.cxx
@@ -15,7 +15,7 @@
  *  limitations under the License.
  *
  *=========================================================================*/
-#include "../include/itkContourSpatialObject.h"
+#include "itkContourSpatialObject.h"
 
 namespace itk
 {
diff --git a/Modules/Core/TestKernel/src/itkTestingHashImageFilter.cxx b/Modules/Core/TestKernel/src/itkTestingHashImageFilter.cxx
index ae14e964190..62b93d931a1 100644
--- a/Modules/Core/TestKernel/src/itkTestingHashImageFilter.cxx
+++ b/Modules/Core/TestKernel/src/itkTestingHashImageFilter.cxx
@@ -26,7 +26,7 @@
  *
  *=========================================================================*/
 
-#include "../include/itkTestingHashImageFilter.h"
+#include "itkTestingHashImageFilter.h"
 
 namespace itk
 {
diff --git a/Modules/Filtering/FFT/src/itkComplexToComplexFFTImageFilter.cxx b/Modules/Filtering/FFT/src/itkComplexToComplexFFTImageFilter.cxx
index 6adaf4d7c1e..47cd220b7f2 100644
--- a/Modules/Filtering/FFT/src/itkComplexToComplexFFTImageFilter.cxx
+++ b/Modules/Filtering/FFT/src/itkComplexToComplexFFTImageFilter.cxx
@@ -15,7 +15,7 @@
  *  limitations under the License.
  *
  *=========================================================================*/
-#include "../include/itkComplexToComplexFFTImageFilter.h"
+#include "itkComplexToComplexFFTImageFilter.h"
 
 namespace itk
 {
diff --git a/Modules/Filtering/FastMarching/src/itkFastMarchingBase.cxx b/Modules/Filtering/FastMarching/src/itkFastMarchingBase.cxx
index 1d131b02496..b177f585d32 100644
--- a/Modules/Filtering/FastMarching/src/itkFastMarchingBase.cxx
+++ b/Modules/Filtering/FastMarching/src/itkFastMarchingBase.cxx
@@ -15,7 +15,7 @@
  *  limitations under the License.
  *
  *=========================================================================*/
-#include "../include/itkFastMarchingBase.h"
+#include "itkFastMarchingBase.h"
 
 namespace itk
 {
diff --git a/Modules/Filtering/FastMarching/src/itkFastMarchingImageFilter.cxx b/Modules/Filtering/FastMarching/src/itkFastMarchingImageFilter.cxx
index c9e64d2c9d6..dcdfba76fde 100644
--- a/Modules/Filtering/FastMarching/src/itkFastMarchingImageFilter.cxx
+++ b/Modules/Filtering/FastMarching/src/itkFastMarchingImageFilter.cxx
@@ -15,7 +15,7 @@
  *  limitations under the License.
  *
  *=========================================================================*/
-#include "../include/itkFastMarchingImageFilter.h"
+#include "itkFastMarchingImageFilter.h"
 
 namespace itk
 {
diff --git a/Modules/Filtering/FastMarching/src/itkFastMarchingReachedTargetNodesStoppingCriterion.cxx b/Modules/Filtering/FastMarching/src/itkFastMarchingReachedTargetNodesStoppingCriterion.cxx
index 06256a4e58e..6cfc3d50401 100644
--- a/Modules/Filtering/FastMarching/src/itkFastMarchingReachedTargetNodesStoppingCriterion.cxx
+++ b/Modules/Filtering/FastMarching/src/itkFastMarchingReachedTargetNodesStoppingCriterion.cxx
@@ -15,7 +15,7 @@
  *  limitations under the License.
  *
  *=========================================================================*/
-#include "../include/itkFastMarchingReachedTargetNodesStoppingCriterion.h"
+#include "itkFastMarchingReachedTargetNodesStoppingCriterion.h"
 
 namespace itk
 {
diff --git a/Modules/Filtering/ImageFeature/src/itkMultiScaleHessianBasedMeasureImageFilter.cxx b/Modules/Filtering/ImageFeature/src/itkMultiScaleHessianBasedMeasureImageFilter.cxx
index 54e0c49eced..792d697d546 100644
--- a/Modules/Filtering/ImageFeature/src/itkMultiScaleHessianBasedMeasureImageFilter.cxx
+++ b/Modules/Filtering/ImageFeature/src/itkMultiScaleHessianBasedMeasureImageFilter.cxx
@@ -15,7 +15,7 @@
  *  limitations under the License.
  *
  *=========================================================================*/
-#include "../include/itkMultiScaleHessianBasedMeasureImageFilter.h"
+#include "itkMultiScaleHessianBasedMeasureImageFilter.h"
 
 namespace itk
 {
diff --git a/Modules/Filtering/QuadEdgeMeshFiltering/src/itkBorderQuadEdgeMeshFilter.cxx b/Modules/Filtering/QuadEdgeMeshFiltering/src/itkBorderQuadEdgeMeshFilter.cxx
index 563c49b5cad..a157e4793c4 100644
--- a/Modules/Filtering/QuadEdgeMeshFiltering/src/itkBorderQuadEdgeMeshFilter.cxx
+++ b/Modules/Filtering/QuadEdgeMeshFiltering/src/itkBorderQuadEdgeMeshFilter.cxx
@@ -15,7 +15,7 @@
  *  limitations under the License.
  *
  *=========================================================================*/
-#include "../include/itkBorderQuadEdgeMeshFilter.h"
+#include "itkBorderQuadEdgeMeshFilter.h"
 
 
 namespace itk
diff --git a/Modules/Filtering/QuadEdgeMeshFiltering/src/itkLaplacianDeformationQuadEdgeMeshFilter.cxx b/Modules/Filtering/QuadEdgeMeshFiltering/src/itkLaplacianDeformationQuadEdgeMeshFilter.cxx
index 39143699a47..9adefe9abd0 100644
--- a/Modules/Filtering/QuadEdgeMeshFiltering/src/itkLaplacianDeformationQuadEdgeMeshFilter.cxx
+++ b/Modules/Filtering/QuadEdgeMeshFiltering/src/itkLaplacianDeformationQuadEdgeMeshFilter.cxx
@@ -15,7 +15,7 @@
  *  limitations under the License.
  *
  *=========================================================================*/
-#include "../include/itkLaplacianDeformationQuadEdgeMeshFilter.h"
+#include "itkLaplacianDeformationQuadEdgeMeshFilter.h"
 
 
 namespace itk
diff --git a/Modules/Filtering/QuadEdgeMeshFiltering/src/itkNormalQuadEdgeMeshFilter.cxx b/Modules/Filtering/QuadEdgeMeshFiltering/src/itkNormalQuadEdgeMeshFilter.cxx
index 97a735c9ed5..590b7671221 100644
--- a/Modules/Filtering/QuadEdgeMeshFiltering/src/itkNormalQuadEdgeMeshFilter.cxx
+++ b/Modules/Filtering/QuadEdgeMeshFiltering/src/itkNormalQuadEdgeMeshFilter.cxx
@@ -15,7 +15,7 @@
  *  limitations under the License.
  *
  *=========================================================================*/
-#include "../include/itkNormalQuadEdgeMeshFilter.h"
+#include "itkNormalQuadEdgeMeshFilter.h"
 
 
 namespace itk
diff --git a/Modules/Numerics/Statistics/src/itkExpectationMaximizationMixtureModelEstimator.cxx b/Modules/Numerics/Statistics/src/itkExpectationMaximizationMixtureModelEstimator.cxx
index 68c82e47643..3a74e448de4 100644
--- a/Modules/Numerics/Statistics/src/itkExpectationMaximizationMixtureModelEstimator.cxx
+++ b/Modules/Numerics/Statistics/src/itkExpectationMaximizationMixtureModelEstimator.cxx
@@ -15,7 +15,7 @@
  *  limitations under the License.
  *
  *=========================================================================*/
-#include "../include/itkExpectationMaximizationMixtureModelEstimator.h"
+#include "itkExpectationMaximizationMixtureModelEstimator.h"
 
 namespace itk
 {
diff --git a/Modules/Registration/FEM/src/itkFEMRegistrationFilter.cxx b/Modules/Registration/FEM/src/itkFEMRegistrationFilter.cxx
index b6b5849258a..6b35c50b0ff 100644
--- a/Modules/Registration/FEM/src/itkFEMRegistrationFilter.cxx
+++ b/Modules/Registration/FEM/src/itkFEMRegistrationFilter.cxx
@@ -15,7 +15,7 @@
  *  limitations under the License.
  *
  *=========================================================================*/
-#include "../include/itkFEMRegistrationFilter.h"
+#include "itkFEMRegistrationFilter.h"
 
 namespace itk
 {
diff --git a/Modules/Registration/PDEDeformable/src/itkESMDemonsRegistrationFunction.cxx b/Modules/Registration/PDEDeformable/src/itkESMDemonsRegistrationFunction.cxx
index 124e22f7fb3..52a9f3a0581 100644
--- a/Modules/Registration/PDEDeformable/src/itkESMDemonsRegistrationFunction.cxx
+++ b/Modules/Registration/PDEDeformable/src/itkESMDemonsRegistrationFunction.cxx
@@ -15,7 +15,7 @@
  *  limitations under the License.
  *
  *=========================================================================*/
-#include "../include/itkESMDemonsRegistrationFunction.h"
+#include "itkESMDemonsRegistrationFunction.h"
 
 namespace itk
 {
diff --git a/Modules/Registration/PDEDeformable/test/itkESMDemonsRegistrationFunctionTest.cxx b/Modules/Registration/PDEDeformable/test/itkESMDemonsRegistrationFunctionTest.cxx
index 24b39673a23..f5dbc7b7ce6 100644
--- a/Modules/Registration/PDEDeformable/test/itkESMDemonsRegistrationFunctionTest.cxx
+++ b/Modules/Registration/PDEDeformable/test/itkESMDemonsRegistrationFunctionTest.cxx
@@ -15,7 +15,7 @@
  *  limitations under the License.
  *
  *=========================================================================*/
-#include "../include/itkESMDemonsRegistrationFunction.h"
+#include "itkESMDemonsRegistrationFunction.h"
 
 int
 itkESMDemonsRegistrationFunctionTest(int, char *[])
diff --git a/Modules/Registration/RegistrationMethodsv4/src/itkImageRegistrationMethodv4.cxx b/Modules/Registration/RegistrationMethodsv4/src/itkImageRegistrationMethodv4.cxx
index f73e82e7f1d..e4d80ca35a6 100644
--- a/Modules/Registration/RegistrationMethodsv4/src/itkImageRegistrationMethodv4.cxx
+++ b/Modules/Registration/RegistrationMethodsv4/src/itkImageRegistrationMethodv4.cxx
@@ -15,7 +15,7 @@
  *  limitations under the License.
  *
  *=========================================================================*/
-#include "../include/itkImageRegistrationMethodv4.h"
+#include "itkImageRegistrationMethodv4.h"
 
 namespace itk
 {
diff --git a/Modules/Segmentation/DeformableMesh/src/itkDeformableSimplexMesh3DGradientConstraintForceFiler.cxx b/Modules/Segmentation/DeformableMesh/src/itkDeformableSimplexMesh3DGradientConstraintForceFiler.cxx
index 6d804b254df..32036717bbb 100644
--- a/Modules/Segmentation/DeformableMesh/src/itkDeformableSimplexMesh3DGradientConstraintForceFiler.cxx
+++ b/Modules/Segmentation/DeformableMesh/src/itkDeformableSimplexMesh3DGradientConstraintForceFiler.cxx
@@ -15,7 +15,7 @@
  *  limitations under the License.
  *
  *=========================================================================*/
-#include "../include/itkDeformableSimplexMesh3DGradientConstraintForceFilter.h"
+#include "itkDeformableSimplexMesh3DGradientConstraintForceFilter.h"
 
 namespace itk
 {
diff --git a/Modules/Segmentation/MarkovRandomFieldsClassifiers/src/itkMRFImageFilter.cxx b/Modules/Segmentation/MarkovRandomFieldsClassifiers/src/itkMRFImageFilter.cxx
index c1c3483cdda..53ec4883b73 100644
--- a/Modules/Segmentation/MarkovRandomFieldsClassifiers/src/itkMRFImageFilter.cxx
+++ b/Modules/Segmentation/MarkovRandomFieldsClassifiers/src/itkMRFImageFilter.cxx
@@ -15,7 +15,7 @@
  *  limitations under the License.
  *
  *=========================================================================*/
-#include "../include/itkMRFImageFilter.h"
+#include "itkMRFImageFilter.h"
 
 namespace itk
 {
diff --git a/Modules/Segmentation/RegionGrowing/src/itkConnectedThresholdImageFilter.cxx b/Modules/Segmentation/RegionGrowing/src/itkConnectedThresholdImageFilter.cxx
index 8cb4b94c291..56f1e16477f 100644
--- a/Modules/Segmentation/RegionGrowing/src/itkConnectedThresholdImageFilter.cxx
+++ b/Modules/Segmentation/RegionGrowing/src/itkConnectedThresholdImageFilter.cxx
@@ -15,7 +15,7 @@
  *  limitations under the License.
  *
  *=========================================================================*/
-#include "../include/itkConnectedThresholdImageFilter.h"
+#include "itkConnectedThresholdImageFilter.h"
 
 namespace itk
 {