Merge remote-tracking branch 'upstream/main' into bibtestFiles

* upstream/main:
  Update deployment-arm64.yml
  fix linebreak
  fix condition
  Update deployment-arm64.yml
  rename
  Update deployment-arm64.yml
  Switch to arm runner macos14
  Update journal abbreviation lists (#10846)
  Fix Suggestion Provider for Crossref during autocompletion disable (#10829)
  Update CSL styles (#10844)
  Space before citations in Openoffice/Libreoffice integration (#10843)

Author: Siedlerchr

.github/workflows/deployment-arm64.yml

@@ -1,16 +1,23 @@
-name: Deployment Release for ARM64 - Run manually!
-
+name: Deployment for Arm64
 on:
+  push:
+    branches:
+      - main
+      - main-release
+    paths-ignore:
+      - 'docs/**'
+      - 'src/test/**'
+      - 'README.md'
+    tags:
+       - '*'
+  pull_request:
+  merge_group:
   workflow_dispatch:
     inputs:
       notarization:
         type: boolean
-        required: true
-        default: true
-  push:
-   branches:
-    - arm64mac-release
-    - updateArm64Notarization
+        required: false
+        default: false
 
 env:
   SpringerNatureAPIKey: ${{ secrets.SpringerNatureAPIKey }}
@@ -30,9 +37,8 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [self-hosted]
         include:
-          - os: self-hosted
+          - os: macos-14
             displayName: macOS (Arm64)
             suffix: '_arm64'
     runs-on: ${{ matrix.os }}
@@ -42,9 +48,9 @@ jobs:
         id: checksecrets
         shell: bash
         run: |
-          [ -n "$BUILDJABREFPRIVATEKEY" ] || exit 1
+         [ -n "$BUILDJABREFPRIVATEKEY" ] || exit 1
         env:
-          BUILDJABREFPRIVATEKEY: ${{ secrets.buildJabRefPrivateKey }}
+         BUILDJABREFPRIVATEKEY: ${{ secrets.buildJabRefPrivateKey }}
       - name: Fetch all history for all tags and branches
         uses: actions/checkout@v4
         with:
@@ -66,29 +72,27 @@ jobs:
       - name: Clean up keychain
         run: |
          security delete-keychain signing_temp.keychain ${{runner.temp}}/keychain/notarization.keychain || true
-      - name: Setup OSX key chain on macOS
+      - name: Setup OSX key chain on macOS-arm
+        if: (steps.checksecrets.outputs.secretspresent == 'YES')
         uses: apple-actions/import-codesign-certs@v2
         with:
           p12-file-base64: ${{ secrets.OSX_SIGNING_CERT }}
           p12-password: ${{ secrets.OSX_CERT_PWD }}
           keychain-password: jabref
       - name: Setup OSX key chain on OSX for app id cert
+        if: (steps.checksecrets.outputs.secretspresent == 'YES')
         uses: apple-actions/import-codesign-certs@v2
         with:
           p12-file-base64: ${{ secrets.OSX_SIGNING_CERT_APPLICATION }}
           p12-password: ${{ secrets.OSX_CERT_PWD }}
           create-keychain: false
           keychain-password: jabref
-      - name: Create notarization keychain
-        run: |
-          mkdir ${{runner.temp}}/keychain
-          security create-keychain -p jabref ${{runner.temp}}/keychain/notarization.keychain
-          security set-keychain-settings ${{runner.temp}}/keychain/notarization.keychain
       - name: Setup Gradle
         uses: gradle/gradle-build-action@v3
       - name: Prepare merged jars and modules dir (macOS)
         run: ./gradlew -i -PprojVersion="${{ steps.gitversion.outputs.AssemblySemVer }}" -PprojVersionInfo="${{ steps.gitversion.outputs.InformationalVersion }}" prepareModulesDir
       - name: Build dmg (macOS)
+        if: (steps.checksecrets.outputs.secretspresent == 'YES')
         shell: bash
         run: |
           jpackage \
@@ -113,6 +117,7 @@ jobs:
           --file-associations buildres/mac/bibtexAssociations.properties \
           --jlink-options --bind-services
       - name: Build pkg (macOS)
+        if: (steps.checksecrets.outputs.secretspresent == 'YES')
         shell: bash
         run: |
           jpackage \
@@ -137,32 +142,85 @@ jobs:
           --file-associations buildres/mac/bibtexAssociations.properties \
           --jlink-options --bind-services
       - name: Rename files with arm64 suffix as well
+        if: (steps.checksecrets.outputs.secretspresent == 'YES')
         shell: bash
         run: |
           mv build/distribution/JabRef-${{ steps.gitversion.outputs.Major }}.${{ steps.gitversion.outputs.Minor }}.dmg  build/distribution/JabRef-${{ steps.gitversion.outputs.Major }}.${{ steps.gitversion.outputs.Minor }}-arm64.dmg
           mv build/distribution/JabRef-${{ steps.gitversion.outputs.Major }}.${{ steps.gitversion.outputs.Minor }}.pkg  build/distribution/JabRef-${{ steps.gitversion.outputs.Major }}.${{ steps.gitversion.outputs.Minor }}-arm64.pkg
+      - name: Setup rsync (macOS)
+        if: ${{ (!startsWith(github.ref, 'refs/heads/gh-readonly-queue')) && (steps.checksecrets.outputs.secretspresent == 'YES') && ((matrix.os == 'macos-14') && !((startsWith(github.ref, 'refs/tags/') || inputs.notarization == true))) }}
+        run: brew install rsync
+      - name: Setup SSH key
+        if: ${{ (steps.checksecrets.outputs.secretspresent == 'YES') && (!startsWith(github.ref, 'refs/heads/gh-readonly-queue')) && ((matrix.os != 'macos-14') || !((startsWith(github.ref, 'refs/tags/') || (inputs.notarization == true)))) }}
+        run: |
+          echo "${{ secrets.buildJabRefPrivateKey }}" > sshkey
+          chmod 600 sshkey
+      - name: Upload to builds.jabref.org (linux, macOS)
+        # macOS: Negated condition of "Upload to GitHub workflow artifacts store (macOS)"
+        #        Reason: We either upload the non-notarized files - or notarize the files later (and upload these later)
+        # needs to be on one line; multi line does not work
+        if: ${{ (!startsWith(github.ref, 'refs/heads/gh-readonly-queue')) && (steps.checksecrets.outputs.secretspresent == 'YES') && ((matrix.os == 'ubuntu-latest') || ((matrix.os == 'macos-14') && !((startsWith(github.ref, 'refs/tags/') || inputs.notarization == true)))) }}        
+        shell: bash
+        run: |
+          rsync -rt --chmod=Du=rwx,Dg=rx,Do=rx,Fu=rw,Fg=r,Fo=r --itemize-changes --stats --rsync-path="mkdir -p /var/www/builds.jabref.org/www/${{ steps.gitversion.outputs.branchName }} && rsync" -e 'ssh -p 9922 -i sshkey -o StrictHostKeyChecking=no' build/distribution/ jrrsync@build-upload.jabref.org:/var/www/builds.jabref.org/www/${{ steps.gitversion.outputs.branchName }}/
+      - name: Upload to GitHub workflow artifacts store (macOS)
+        if: (matrix.os == 'macos-14') && (steps.checksecrets.outputs.secretspresent == 'YES') && (startsWith(github.ref, 'refs/tags/') || inputs.notarization == true)
+        uses: actions/upload-artifact@v4
+        with:
+          # tbn = to-be-notarized
+          name: JabRef-macOS-arm-tbn
+          path: build/distribution
+          compression-level: 0 # no compression
+      - name: Upload to GitHub workflow artifacts store
+        if: (steps.checksecrets.outputs.secretspresent != 'YES')
+        uses: actions/upload-artifact@v4
+        with:
+          # tbn = to-be-notarized
+          name: JabRef-${{ matrix.os }}
+          path: build/distribution
+          compression-level: 0 # no compression
+
+  notarize: # outsourced in a separate job to be able to rerun if this fails for timeouts
+    name: macOS notarization-arm
+    runs-on: macos-14
+    needs: [build]
+    if: ${{ startsWith(github.ref, 'refs/tags/') || inputs.notarization == true }}
+    steps:
+      - name: Check secrets presence
+        id: checksecrets
+        shell: bash
+        run: |
+          if [ "$BUILDJABREFPRIVATEKEY" == "" ]; then
+            echo "secretspresent=NO" >> $GITHUB_OUTPUT
+          else
+            echo "secretspresent=YES" >> $GITHUB_OUTPUT
+          fi
+        env:
+          BUILDJABREFPRIVATEKEY: ${{ secrets.buildJabRefPrivateKey }}
+      - name: Download from GitHub workflow artifacts store (macOS)
+        if: (steps.checksecrets.outputs.secretspresent == 'YES')
+        uses: actions/download-artifact@master
+        with:
+          name: JabRef-macOS-arm-tbn
+          path: build/distribution/
       - name: Notarize dmg
-        if: (startsWith(github.ref, 'refs/tags/') || (${{ inputs.notarization }}))
+        if: (steps.checksecrets.outputs.secretspresent == 'YES')
         shell: bash
         run: |
-          xcrun notarytool store-credentials "notarytool-profile" --apple-id "vorstand@jabref.org" --team-id "6792V39SK3" --password "${{ secrets.OSX_NOTARIZATION_APP_PWD }}" --keychain ${{runner.temp}}/keychain/notarization.keychain
-          xcrun notarytool submit build/distribution/JabRef-${{ steps.gitversion.outputs.Major }}.${{ steps.gitversion.outputs.Minor }}-arm64.dmg --keychain-profile "notarytool-profile" --keychain ${{runner.temp}}/keychain/notarization.keychain --wait
-          xcrun stapler staple build/distribution/JabRef-${{ steps.gitversion.outputs.Major }}.${{ steps.gitversion.outputs.Minor }}-arm64.dmg
+          xcrun notarytool store-credentials "notarytool-profile" --apple-id "vorstand@jabref.org" --team-id "6792V39SK3" --password "${{ secrets.OSX_NOTARIZATION_APP_PWD }}"
+          xcrun notarytool submit build/distribution/JabRef-${{ needs.build.outputs.major }}.${{ needs.build.outputs.minor }}-arm64.dmg --keychain-profile "notarytool-profile" --wait
+          xcrun stapler staple build/distribution/JabRef-${{ needs.build.outputs.major }}.${{ needs.build.outputs.minor }}-arm64.dmg
       - name: Notarize pkg
-        if: (startsWith(github.ref, 'refs/tags/') || (${{ inputs.notarization }}))
+        if: (steps.checksecrets.outputs.secretspresent == 'YES')
         shell: bash
         run: |
-          xcrun notarytool store-credentials "notarytool-profile" --apple-id "vorstand@jabref.org" --team-id "6792V39SK3" --password "${{ secrets.OSX_NOTARIZATION_APP_PWD }}" --keychain ${{runner.temp}}/keychain/notarization.keychain
-          xcrun notarytool submit build/distribution/JabRef-${{ steps.gitversion.outputs.Major }}.${{ steps.gitversion.outputs.Minor }}-arm64.pkg --keychain-profile "notarytool-profile" --keychain ${{runner.temp}}/keychain/notarization.keychain --wait
-          xcrun stapler staple build/distribution/JabRef-${{ steps.gitversion.outputs.Major }}.${{ steps.gitversion.outputs.Minor }}-arm64.pkg
-      - name: Upload with rsync
-        if: ${{ !startsWith(github.ref, 'refs/heads/gh-readonly-queue') }}
+          xcrun notarytool store-credentials "notarytool-profile" --apple-id "vorstand@jabref.org" --team-id "6792V39SK3" --password "${{ secrets.OSX_NOTARIZATION_APP_PWD }}"
+          xcrun notarytool submit build/distribution/JabRef-${{ needs.build.outputs.major }}.${{ needs.build.outputs.minor }}-arm64.pkg --keychain-profile "notarytool-profile" --wait
+          xcrun stapler staple build/distribution/JabRef-${{ needs.build.outputs.major }}.${{ needs.build.outputs.minor }}-arm64.pkg
+      - name: Upload to builds.jabref.org
+        if: (steps.checksecrets.outputs.secretspresent == 'YES')
         shell: bash
         run: |
-          rsync -Pavz --itemize-changes --stats --partial-dir=/tmp/partial --rsync-path="mkdir -p /var/www/builds.jabref.org/www/${{ steps.gitversion.outputs.branchName }} && rsync" -e 'ssh -p 9922 -i ~/.ssh/id_rsa' build/distribution/ jrrsync@build-upload.jabref.org:/var/www/builds.jabref.org/www/${{ steps.gitversion.outputs.branchName }}/
-      - name: Upload to GitHub workflow artifacts store
-        if: ${{ !startsWith(github.ref, 'refs/heads/gh-readonly-queue') }}
-        uses: actions/upload-artifact@v4
-        with:
-          name: JabRef-${{ matrix.displayName }}
-          path: build/distribution
+          echo "${{ secrets.buildJabRefPrivateKey }}" > sshkey
+          chmod 600 sshkey
+          rsync -rt --chmod=Du=rwx,Dg=rx,Do=rx,Fu=rw,Fg=r,Fo=r --itemize-changes --stats --rsync-path="mkdir -p /var/www/builds.jabref.org/www/${{ needs.build.outputs.branchname }} && rsync" -e 'ssh -p 9922 -i sshkey -o StrictHostKeyChecking=no' build/distribution/ jrrsync@build-upload.jabref.org:/var/www/builds.jabref.org/www/${{ needs.build.outputs.branchname }}/

CHANGELOG.md

@@ -15,6 +15,7 @@ Note that this project **does not** adhere to [Semantic Versioning](https://semv
 - We added a fetcher for [ISIDORE](https://isidore.science/), simply paste in the link into the text field or the last 6 digits in the link that identify that paper. [#10423](https://github.com/JabRef/jabref/issues/10423)
 - When importing entries form the "Citation relations" tab, the field [cites](https://docs.jabref.org/advanced/entryeditor/entrylinks) is now filled according to the relationship between the entries. [#10572](https://github.com/JabRef/jabref/pull/10752)
 - We added a new group icon column to the main table showing the icons of the entry's groups. [#10801](https://github.com/JabRef/jabref/pull/10801)
+- We added a new boolean to the style files for Openoffice/Libreoffice integration to switch between ZERO_WIDTH_SPACE (default) and no space. [#10843](https://github.com/JabRef/jabref/pull/10843)
 
 ### Changed
 
@@ -36,6 +37,7 @@ Note that this project **does not** adhere to [Semantic Versioning](https://semv
 - The last page of a PDF is now indexed by the full text search. [#10193](https://github.com/JabRef/jabref/issues/10193)
 - We fixed an issue where the duplicate check did not take umlauts or other LaTeX-encoded characters into account. [#10744](https://github.com/JabRef/jabref/pull/10744)
 - We fixed the colors of the icon on hover for unset special fields. [#10431](https://github.com/JabRef/jabref/issues/10431)
+- We fixed an issue where the CrossRef field did not work if autocompletion was disabled [#8145](https://github.com/JabRef/jabref/issues/8145)
 
 ### Removed
 

src/main/java/org/jabref/gui/LibraryTab.java

@@ -568,8 +568,8 @@ private void setupAutoCompletion() {
         if (autoCompletePreferences.shouldAutoComplete()) {
             suggestionProviders = new SuggestionProviders(getDatabase(), Globals.journalAbbreviationRepository, autoCompletePreferences);
         } else {
-            // Create empty suggestion providers if auto-completion is deactivated
-            suggestionProviders = new SuggestionProviders();
+            // Create suggestion providers with database for crossref if auto-completion is deactivated
+            suggestionProviders = new SuggestionProviders(getDatabase());
         }
         searchAutoCompleter = new PersonNameSuggestionProvider(FieldFactory.getPersonNameFields(), getDatabase());
     }

src/main/java/org/jabref/gui/autocompleter/SuggestionProviders.java

@@ -22,12 +22,21 @@ public SuggestionProviders(BibDatabase database, JournalAbbreviationRepository a
         this.isEmpty = false;
     }
 
+    public SuggestionProviders(BibDatabase database) {
+        this.database = database;
+        this.isEmpty = true;
+    }
+
     public SuggestionProviders() {
         this.isEmpty = true;
     }
 
     public SuggestionProvider<?> getForField(Field field) {
         if (isEmpty || !autoCompletePreferences.getCompleteFields().contains(field)) {
+            Set<FieldProperty> fieldProperties = field.getProperties();
+            if (fieldProperties.contains(FieldProperty.SINGLE_ENTRY_LINK)) {
+                return new BibEntrySuggestionProvider(database);
+            }
             return new EmptySuggestionProvider();
         }
 

src/main/java/org/jabref/logic/openoffice/frontend/UpdateCitationMarkers.java

@@ -78,8 +78,11 @@ public static void fillCitationMarkInCursor(XTextDocument doc,
 
         if (withText) {
             OOText citationText2 = style.decorateCitationMarker(citationText);
-            // inject a ZERO_WIDTH_SPACE to hold the initial character format
-            final String ZERO_WIDTH_SPACE = "\u200b";
+            String ZERO_WIDTH_SPACE = "";
+            if (style.spaceBeforeCitation()) {
+              // inject a ZERO_WIDTH_SPACE to hold the initial character format
+              ZERO_WIDTH_SPACE = "\u200b";
+            }
             citationText2 = OOText.fromString(ZERO_WIDTH_SPACE + citationText2.toString());
             OOTextIntoOO.write(doc, cursor, citationText2);
         } else {

src/main/java/org/jabref/logic/openoffice/style/OOBibStyle.java

@@ -109,6 +109,7 @@ public class OOBibStyle implements Comparable<OOBibStyle> {
     private static final String AUTHOR_FIELD = "AuthorField";
     private static final String BRACKET_AFTER = "BracketAfter";
     private static final String BRACKET_BEFORE = "BracketBefore";
+    private static final String SPACE_BEFORE = "SpaceBefore";
     private static final String IS_NUMBER_ENTRIES = "IsNumberEntries";
     private static final String IS_SORT_BY_POSITION = "IsSortByPosition";
     private static final String SORT_ALGORITHM = "SortAlgorithm";
@@ -203,6 +204,7 @@ private void setDefaultProperties() {
         citProperties.put(IN_TEXT_YEAR_SEPARATOR, " ");
         citProperties.put(BRACKET_BEFORE, "(");
         citProperties.put(BRACKET_AFTER, ")");
+        citProperties.put(SPACE_BEFORE, Boolean.TRUE);
         citProperties.put(CITATION_SEPARATOR, "; ");
         citProperties.put(PAGE_INFO_SEPARATOR, "; ");
         citProperties.put(GROUPED_NUMBERS_SEPARATOR, "-");
@@ -493,6 +495,10 @@ public boolean isFormatCitations() {
         return (Boolean) citProperties.get(FORMAT_CITATIONS);
     }
 
+    public boolean spaceBeforeCitation() {
+        return (Boolean) citProperties.get(SPACE_BEFORE);
+    }
+
     public boolean isCitationKeyCiteMarkers() {
         return (Boolean) citProperties.get(CITATION_KEY_CITATIONS);
     }

src/test/resources/org/jabref/logic/openoffice/style/test.jstyle

@@ -27,6 +27,7 @@ FormatCitations="false"
 CitationCharacterFormat="Default"
 PageInfoSeparator="; "
 OxfordComma=","
+SpaceBefore="true"
 
 LAYOUT
 article=<b>\format[Authors(LastFirst,Semicolon)]{\author}</b> (<b>\year\uniq</b>). <i>\title</i>, \journal \volume\begin{pages} : \format[FormatPagesForHTML]{\pages}\end{pages}.

src/test/resources/org/jabref/logic/openoffice/style/testWithDefaultAtFirstLIne.jstyle

@@ -27,6 +27,7 @@ FormatCitations="false"
 CitationCharacterFormat="Default"
 PageInfoSeparator="; "
 OxfordComma=","
+SpaceBefore="true"
 
 LAYOUT