[BUG] update Arima preset nf-core#127

nservant · nservant · commit 7806177e5ba4 · 2022-07-29T16:26:35.000+02:00
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -9,6 +9,10 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 - DSL2 version of nf-core-hic pipeline
 
+### `Fixed`
+
+- Fix error in the Arima preset (#127)
+
 ## v1.3.1 - 2021-09-25
 
 ### `Fixed`
diff --git a/modules/local/cooltools/eigscis.nf b/modules/local/cooltools/eigscis.nf
diff --git a/nextflow.config b/nextflow.config
@@ -50,7 +50,7 @@ params {
       }
       'arima' {
          restriction_site='^GATC,G^ANT'
-         ligation_site='GATCGATC,GATCGANT,GANTGATC,GANTGANT'
+         ligation_site='GATCGATC,GANTGATC,GANTANTC,GATCANTC'
       }
     }
     

Original file line number	Diff line number	Diff line change
`@@ -50,7 +50,7 @@ params {`
`50`	`50`	`}`
`51`	`51`	`'arima' {`
`52`	`52`	`restriction_site='^GATC,G^ANT'`
`53`		`- ligation_site='GATCGATC,GATCGANT,GANTGATC,GANTGANT'`
	`53`	`+ ligation_site='GATCGATC,GANTGATC,GANTANTC,GATCANTC'`
`54`	`54`	`}`
`55`	`55`	`}`
`56`	`56`