From e51a7197671691617eb61bc28c93355d746bfe5c Mon Sep 17 00:00:00 2001 From: bbimber Date: Sun, 14 Jul 2024 16:24:12 -0700 Subject: [PATCH 1/5] Ensure PopulateIds runs prior to center ETLs --- mcc/resources/etls/snprc-datasets.xml | 10 ++++++++-- mcc/resources/etls/wnprc-datasets.xml | 10 ++++++++-- mcc/resources/queries/mcc/genomicDatasetsSource.sql | 2 +- 3 files changed, 17 insertions(+), 5 deletions(-) diff --git a/mcc/resources/etls/snprc-datasets.xml b/mcc/resources/etls/snprc-datasets.xml index 401ebba93..9b66a4814 100644 --- a/mcc/resources/etls/snprc-datasets.xml +++ b/mcc/resources/etls/snprc-datasets.xml @@ -178,11 +178,17 @@ + + + + + + + - - + diff --git a/mcc/resources/etls/wnprc-datasets.xml b/mcc/resources/etls/wnprc-datasets.xml index dbe44ce86..97ecaf334 100644 --- a/mcc/resources/etls/wnprc-datasets.xml +++ b/mcc/resources/etls/wnprc-datasets.xml @@ -140,10 +140,16 @@ + + + + + + + - - + diff --git a/mcc/resources/queries/mcc/genomicDatasetsSource.sql b/mcc/resources/queries/mcc/genomicDatasetsSource.sql index 1036baafd..c117ff514 100644 --- a/mcc/resources/queries/mcc/genomicDatasetsSource.sql +++ b/mcc/resources/queries/mcc/genomicDatasetsSource.sql @@ -7,4 +7,4 @@ SELECT FROM sequenceanalysis.sequence_readsets r -WHERE r.subjectid LIKE 'MCC%' \ No newline at end of file +WHERE r.subjectid LIKE 'MCC%' AND r.subjectid NOT LIKE 'MCC_%' \ No newline at end of file From 54fd86c1dcf0a5651702da65e37499e3df3a7044 Mon Sep 17 00:00:00 2001 From: bbimber Date: Wed, 17 Jul 2024 06:38:53 -0700 Subject: [PATCH 2/5] Add IDR query metadata --- .../queries/bimber_data/pvl.query.xml | 35 ++++++ .../queries/bimber_data/pvl/.qview.xml | 13 +++ .../queries/bimber_data/subjects.query.xml | 107 ++++++++++++++++++ .../queries/bimber_data/subjects/.qview.xml | 19 ++++ .../queries/bimber_data/vacc.query.xml | 78 +++++++++++++ .../queries/bimber_data/vacc/.qview.xml | 21 ++++ 6 files changed, 273 insertions(+) create mode 100644 IDR/resources/queries/bimber_data/pvl.query.xml create mode 100644 IDR/resources/queries/bimber_data/pvl/.qview.xml create mode 100644 IDR/resources/queries/bimber_data/subjects.query.xml create mode 100644 IDR/resources/queries/bimber_data/subjects/.qview.xml create mode 100644 IDR/resources/queries/bimber_data/vacc.query.xml create mode 100644 IDR/resources/queries/bimber_data/vacc/.qview.xml diff --git a/IDR/resources/queries/bimber_data/pvl.query.xml b/IDR/resources/queries/bimber_data/pvl.query.xml new file mode 100644 index 000000000..4aade7f8b --- /dev/null +++ b/IDR/resources/queries/bimber_data/pvl.query.xml @@ -0,0 +1,35 @@ + + + + + IDR PVL Data + + + Subject Id + + bimber_data + subjects + Rh + Rh + + + + PVL Date + + + PVL + + + Comment + + + User + + + Date Created + + +
+ + + diff --git a/IDR/resources/queries/bimber_data/pvl/.qview.xml b/IDR/resources/queries/bimber_data/pvl/.qview.xml new file mode 100644 index 000000000..e527bca3c --- /dev/null +++ b/IDR/resources/queries/bimber_data/pvl/.qview.xml @@ -0,0 +1,13 @@ + + + + + + + + + + + + + \ No newline at end of file diff --git a/IDR/resources/queries/bimber_data/subjects.query.xml b/IDR/resources/queries/bimber_data/subjects.query.xml new file mode 100644 index 000000000..c2f1bc116 --- /dev/null +++ b/IDR/resources/queries/bimber_data/subjects.query.xml @@ -0,0 +1,107 @@ + + + + + IDR Subjects + + + ID + true + + + Species + + + SubjectId + + + Cohort + + + Hansen + true + + + PI + + + Cohort ID + + + Comment + + + Subcohort + + + Group + + + Group Order + + + Group ID + true + + + Group Note + + + Rhesus Code + + + Group Num + + + Sex + + + Current Weight + + + Cohort Start + + + Cohort End + + + D0 + + + DPC0 + + + contprog + + + PID0 + + + DPT0 + + + Birth + + + Nx Date + + + Stims + + + Protocol + + + Project + + + IACUC PI + + + Active? + + +
+ + + diff --git a/IDR/resources/queries/bimber_data/subjects/.qview.xml b/IDR/resources/queries/bimber_data/subjects/.qview.xml new file mode 100644 index 000000000..73866d4de --- /dev/null +++ b/IDR/resources/queries/bimber_data/subjects/.qview.xml @@ -0,0 +1,19 @@ + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/IDR/resources/queries/bimber_data/vacc.query.xml b/IDR/resources/queries/bimber_data/vacc.query.xml new file mode 100644 index 000000000..654ed1e54 --- /dev/null +++ b/IDR/resources/queries/bimber_data/vacc.query.xml @@ -0,0 +1,78 @@ + + + + + IDR Vaccinations + + + ID + true + + + SubjectId + + bimber_data + subjects + Rh + Rh + + + + Vaccine Date + + + Type + + + Dose + + + Route + + + Administration Location + + + Stock Date + + + Take? + + + Shed Status + + + Vector Entry + + + Vector ID + + + Vaccine Name + + + Backbone + + + Virus Species + + + Antigen Source + + + ORF + + + Comment + + + Created + + + edited + + +
+ + + diff --git a/IDR/resources/queries/bimber_data/vacc/.qview.xml b/IDR/resources/queries/bimber_data/vacc/.qview.xml new file mode 100644 index 000000000..fea8dee2f --- /dev/null +++ b/IDR/resources/queries/bimber_data/vacc/.qview.xml @@ -0,0 +1,21 @@ + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file From 36c90b80a47b63efdefa2557d520206a8b8c62e2 Mon Sep 17 00:00:00 2001 From: bbimber Date: Fri, 19 Jul 2024 10:31:29 -0700 Subject: [PATCH 3/5] Refactor components to allow re-use --- mcc/src/client/Dashboard/Dashboard.tsx | 6 +++--- mcc/src/client/GeneticsPlot/GeneticsPlot.tsx | 2 +- .../{Dashboard => components/dashboard}/BarChart.spec.tsx | 0 .../client/{Dashboard => components/dashboard}/BarChart.tsx | 0 .../{Dashboard => components/dashboard}/PieChart.spec.tsx | 0 .../client/{Dashboard => components/dashboard}/PieChart.tsx | 0 .../{Dashboard => components/dashboard}/dashboard.css | 0 7 files changed, 4 insertions(+), 4 deletions(-) rename mcc/src/client/{Dashboard => components/dashboard}/BarChart.spec.tsx (100%) rename mcc/src/client/{Dashboard => components/dashboard}/BarChart.tsx (100%) rename mcc/src/client/{Dashboard => components/dashboard}/PieChart.spec.tsx (100%) rename mcc/src/client/{Dashboard => components/dashboard}/PieChart.tsx (100%) rename mcc/src/client/{Dashboard => components/dashboard}/dashboard.css (100%) diff --git a/mcc/src/client/Dashboard/Dashboard.tsx b/mcc/src/client/Dashboard/Dashboard.tsx index 31776476f..fe1ba520d 100644 --- a/mcc/src/client/Dashboard/Dashboard.tsx +++ b/mcc/src/client/Dashboard/Dashboard.tsx @@ -1,11 +1,11 @@ -import './dashboard.css'; +import '../components/dashboard/dashboard.css'; import React, { useState, useEffect } from 'react'; import { Query } from '@labkey/api'; import { getServerContext } from "@labkey/api"; -import PieChart from './PieChart'; -import BarChart from './BarChart'; +import PieChart from '../components/dashboard/PieChart'; +import BarChart from '../components/dashboard/BarChart'; export function Dashboard() { const [demographics, setDemographics] = useState(null); diff --git a/mcc/src/client/GeneticsPlot/GeneticsPlot.tsx b/mcc/src/client/GeneticsPlot/GeneticsPlot.tsx index 4118e2505..083627a1e 100644 --- a/mcc/src/client/GeneticsPlot/GeneticsPlot.tsx +++ b/mcc/src/client/GeneticsPlot/GeneticsPlot.tsx @@ -1,6 +1,6 @@ import React, { useEffect, useState } from 'react'; import { ActionURL, Filter, getServerContext, Query } from '@labkey/api'; -import './../Dashboard/dashboard.css'; +import '../components/dashboard/dashboard.css'; import ScatterChart from './ScatterChart'; import { Box, Tab, Tabs } from '@mui/material'; import KinshipTable from './KinshipTable'; diff --git a/mcc/src/client/Dashboard/BarChart.spec.tsx b/mcc/src/client/components/dashboard/BarChart.spec.tsx similarity index 100% rename from mcc/src/client/Dashboard/BarChart.spec.tsx rename to mcc/src/client/components/dashboard/BarChart.spec.tsx diff --git a/mcc/src/client/Dashboard/BarChart.tsx b/mcc/src/client/components/dashboard/BarChart.tsx similarity index 100% rename from mcc/src/client/Dashboard/BarChart.tsx rename to mcc/src/client/components/dashboard/BarChart.tsx diff --git a/mcc/src/client/Dashboard/PieChart.spec.tsx b/mcc/src/client/components/dashboard/PieChart.spec.tsx similarity index 100% rename from mcc/src/client/Dashboard/PieChart.spec.tsx rename to mcc/src/client/components/dashboard/PieChart.spec.tsx diff --git a/mcc/src/client/Dashboard/PieChart.tsx b/mcc/src/client/components/dashboard/PieChart.tsx similarity index 100% rename from mcc/src/client/Dashboard/PieChart.tsx rename to mcc/src/client/components/dashboard/PieChart.tsx diff --git a/mcc/src/client/Dashboard/dashboard.css b/mcc/src/client/components/dashboard/dashboard.css similarity index 100% rename from mcc/src/client/Dashboard/dashboard.css rename to mcc/src/client/components/dashboard/dashboard.css From a83cd37fb6cf73da1b0b4c7ec3d2ecf3719b3a8d Mon Sep 17 00:00:00 2001 From: bbimber Date: Tue, 23 Jul 2024 16:29:48 -0700 Subject: [PATCH 4/5] Improve code behind MCC animal rename --- mcc/src/org/labkey/mcc/MccController.java | 129 ++++++++++++++++------ 1 file changed, 97 insertions(+), 32 deletions(-) diff --git a/mcc/src/org/labkey/mcc/MccController.java b/mcc/src/org/labkey/mcc/MccController.java index e560f2ac2..24adaaed2 100644 --- a/mcc/src/org/labkey/mcc/MccController.java +++ b/mcc/src/org/labkey/mcc/MccController.java @@ -16,6 +16,8 @@ package org.labkey.mcc; +import jakarta.mail.Address; +import jakarta.mail.Message; import org.apache.commons.lang3.StringUtils; import org.apache.logging.log4j.LogManager; import org.apache.logging.log4j.Logger; @@ -87,8 +89,6 @@ import org.springframework.validation.Errors; import org.springframework.web.servlet.ModelAndView; -import jakarta.mail.Address; -import jakarta.mail.Message; import java.sql.SQLException; import java.util.ArrayList; import java.util.Arrays; @@ -836,10 +836,50 @@ public Object execute(RenameIdsForm form, BindException errors) throws Exception // NOTE: include this value so it will get added to the audit trail. This is a loose way to connect changes made in this transaction final String batchId = "MCC.Rename." + new GUID(); Set messages = new HashSet<>(); + + // Perform MCC ID updates first, to ensure the dataset updates dont auto-create them: + for (String oldId : oldToNew.keySet()) + { + // Find the MCC ID of the new ID: + String mccIdForOldId = new TableSelector(mccAliases, PageFlowUtil.set("externalAlias"), new SimpleFilter(FieldKey.fromString("subjectname"), oldId), null).getObject(String.class); + String mccIdForNewId = new TableSelector(mccAliases, PageFlowUtil.set("externalAlias"), new SimpleFilter(FieldKey.fromString("subjectname"), oldToNew.get(oldId)), null).getObject(String.class); + + if (mccIdForOldId == null) + { + // This should not really happen... + _log.error("An MCC rename was performed where the original ID lacked an MCC alias: " + oldId); + messages.add("Missing MCC alias: " + oldId); + } + + if (mccIdForNewId == null) + { + if (mccIdForOldId != null) + { + // Create record for the new ID pointing to the MCC ID of the original + List> toInsert = Arrays.asList(Map.of( + "subjectname", mccIdForOldId, + "_batchId_", batchId + )); + BatchValidationException bve = new BatchValidationException(); + mccAliases.getUpdateService().insertRows(getUser(), getContainer(), toInsert, bve, null, null); + if (bve.hasErrors()) + { + throw bve; + } + } + } + else if (mccIdForOldId != null) + { + messages.add("Both IDs have existing MCC aliases, no changes were made: " + oldId + " / " + oldToNew.get(oldId)); + } + } + + // Update ID field of each dataset: for (Dataset ds : s.getDatasets()) { + Set fieldList = "demographics".equalsIgnoreCase(ds.getName()) ? PageFlowUtil.set("Id", "lsid", "alternateIds") : PageFlowUtil.set("Id", "lsid"); TableInfo ti = ds.getTableInfo(getUser()); - TableSelector ts = new TableSelector(ti, PageFlowUtil.set("Id", "lsid"), new SimpleFilter(FieldKey.fromString("Id"), oldToNew.keySet(), CompareType.IN), null); + TableSelector ts = new TableSelector(ti, fieldList, new SimpleFilter(FieldKey.fromString("Id"), oldToNew.keySet(), CompareType.IN), null); if (!ts.exists()) { continue; @@ -858,7 +898,22 @@ public Object execute(RenameIdsForm form, BindException errors) throws Exception } } - toUpdate.add(Map.of("lsid", rs.getString(FieldKey.fromString("lsid")), "Id", oldToNew.get(rs.getString(FieldKey.fromString("Id"))), "_batchId_", batchId)); + Map rowMap = Map.of( + "lsid", rs.getString(FieldKey.fromString("lsid")), + "Id", oldToNew.get(rs.getString(FieldKey.fromString("Id"))), + "_batchId_", batchId + ); + + if ("demographics".equalsIgnoreCase(ds.getName())) + { + String alternateIds = StringUtils.trimToNull(rs.getString(FieldKey.fromString("alternateIds"))); + alternateIds = alternateIds == null ? rs.getString(FieldKey.fromString("Id")) : alternateIds + "," + rs.getString(FieldKey.fromString("Id")); + + rowMap = new HashMap<>(rowMap); + rowMap.put("alternateIds", alternateIds); + } + + toUpdate.add(rowMap); oldKeys.add(Map.of("lsid", rs.getString(FieldKey.fromString("lsid")))); idsUpdated.add(rs.getString(FieldKey.fromString("Id"))); totalRecordsUpdated.getAndIncrement(); @@ -879,41 +934,51 @@ public Object execute(RenameIdsForm form, BindException errors) throws Exception } } - for (String oldId : oldToNew.keySet()) + // Now dam/sire: + TableInfo ti = s.getDatasetByName("demographics").getTableInfo(getUser()); + TableSelector ts = new TableSelector(ti, PageFlowUtil.set("lsid", "Id", "dam", "sire"), new SimpleFilter(new SimpleFilter.OrClause( + new SimpleFilter.InClause(FieldKey.fromString("dam"), oldToNew.keySet()), + new SimpleFilter.InClause(FieldKey.fromString("sire"), oldToNew.keySet()) + )), null); + + if (!ts.exists()) { - // Find the MCC ID of the new ID: - String mccIdForOldId = new TableSelector(mccAliases, PageFlowUtil.set("externalAlias"), new SimpleFilter(FieldKey.fromString("subjectname"), oldId), null).getObject(String.class); - String mccIdForNewId = new TableSelector(mccAliases, PageFlowUtil.set("externalAlias"), new SimpleFilter(FieldKey.fromString("subjectname"), oldToNew.get(oldId)), null).getObject(String.class); + throw new IllegalStateException("Demographics table not found"); + } - if (mccIdForOldId == null) + List> toUpdate = new ArrayList<>(); + List> oldKeys = new ArrayList<>(); + ts.forEachResults(rs -> { + for (String oldId : oldToNew.keySet()) { - // This should not really happen... - _log.error("An MCC rename was performed where the original ID lacked an MCC alias: " + oldId); - messages.add("Missing MCC alias: " + oldId); - } + Map rowMap = new HashMap<>(Map.of( + "lsid", rs.getString(FieldKey.fromString("lsid")), + "Id", rs.getString(FieldKey.fromString("Id")), + "_batchId_", batchId + )); + + boolean hasChanges = false; + if (oldId.equalsIgnoreCase(rs.getString(FieldKey.fromString("dam")))) + { + rowMap.put("dam", oldToNew.get(oldId)); + hasChanges = true; + } - if (mccIdForNewId == null) - { - if (mccIdForOldId != null) + if (oldId.equalsIgnoreCase(rs.getString(FieldKey.fromString("sire")))) { - // Create record for the new ID pointing to the MCC ID of the original - List> toInsert = Arrays.asList(Map.of( - "subjectname", mccIdForOldId, - "_batchId_", batchId - )); - BatchValidationException bve = new BatchValidationException(); - mccAliases.getUpdateService().insertRows(getUser(), getContainer(), toInsert, bve, null, null); - if (bve.hasErrors()) - { - throw bve; - } + rowMap.put("sire", oldToNew.get(oldId)); + hasChanges = true; + } + + if (hasChanges) + { + toUpdate.add(rowMap); + oldKeys.add(Map.of("lsid", rs.getString(FieldKey.fromString("lsid")))); + idsUpdated.add(rs.getString(FieldKey.fromString("Id"))); + totalRecordsUpdated.getAndIncrement(); } } - else if (mccIdForOldId != null) - { - messages.add("Both IDs have existing MCC aliases, no changes were made: " + oldId + " / " + oldToNew.get(oldId)); - } - } + }); transaction.commit(); From ec8a353c11051856b47834cd22ce84507114da1c Mon Sep 17 00:00:00 2001 From: bbimber Date: Tue, 23 Jul 2024 21:40:34 -0700 Subject: [PATCH 5/5] Update MCC npm versions --- mcc/jest.config.js | 2 +- mcc/package-lock.json | 2907 ++++++++++------- mcc/package.json | 9 +- .../queries/study/demographics/.qview.xml | 1 + mcc/src/client/Dashboard/dev.tsx | 14 +- mcc/src/client/Dashboard/webpart/dev.tsx | 16 +- mcc/src/client/GeneticsPlot/dev.tsx | 14 +- mcc/src/client/GeneticsPlot/webpart/dev.tsx | 14 +- 8 files changed, 1715 insertions(+), 1262 deletions(-) diff --git a/mcc/jest.config.js b/mcc/jest.config.js index 8c1691a3b..c1ffa7bc5 100644 --- a/mcc/jest.config.js +++ b/mcc/jest.config.js @@ -19,7 +19,7 @@ module.exports = { '^.+\\.tsx?$': [ 'ts-jest', { - tsconfig: 'node_modules/@labkey/build/webpack/tsconfig.json', + isolatedModules: true } ], }, diff --git a/mcc/package-lock.json b/mcc/package-lock.json index 6303d5198..1293be11d 100644 --- a/mcc/package-lock.json +++ b/mcc/package-lock.json @@ -10,21 +10,20 @@ "dependencies": { "@emotion/react": "^11.11.1", "@emotion/styled": "^11.11.0", - "@labkey/api": "^1.24.0", + "@labkey/api": "^1.34.1", "@mui/material": "^5.0.0", "@mui/styles": "^5.14.7", "@mui/x-data-grid": "^6.0.0", - "chart.js": "^4.4.0", + "chart.js": "^4.4.3", "react": "^17.0.2", "react-chartjs-2": "^5.2.0", "react-dom": "^17.0.2", - "react-hot-loader": "^4.13.0", "react-tooltip": "^5.21.1", "tsv": "^0.2.0", "uuid": "^9.0.0" }, "devDependencies": { - "@labkey/build": "^6.16.0", + "@labkey/build": "^7.3.0", "@types/chart.js": "^2.9.37", "@types/jest": "^29.0.0", "@types/jexl": "^2.3.1", @@ -41,7 +40,7 @@ "jest-cli": "^29.0.0", "jest-environment-jsdom": "^29.7.0", "jest-mock": "^29.0.0", - "rimraf": "^3.0.2", + "rimraf": "^6.0.1", "ts-jest": "^29.0.0" } }, @@ -59,43 +58,43 @@ } }, "node_modules/@babel/code-frame": { - 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"version": "8.13.0", - "resolved": "https://registry.npmjs.org/ws/-/ws-8.13.0.tgz", - "integrity": "sha512-x9vcZYTrFPC7aSIbj7sRCYo7L/Xb8Iy+pW0ng0wt2vCJv7M9HOMy0UoN3rr+IFC7hb7vXoqS+P9ktyLLLhO+LA==", + "version": "8.18.0", + "resolved": "https://registry.npmjs.org/ws/-/ws-8.18.0.tgz", + "integrity": "sha512-8VbfWfHLbbwu3+N6OKsOMpBdT4kXPDDB9cJk2bJ6mh9ucxdlnNvH1e+roYkKmN9Nxw2yjz7VzeO9oOz2zJ04Pw==", "dev": true, "engines": { "node": ">=10.0.0" diff --git a/mcc/package.json b/mcc/package.json index 6744b6038..ecb1a82c3 100644 --- a/mcc/package.json +++ b/mcc/package.json @@ -13,21 +13,20 @@ "dependencies": { "@emotion/react": "^11.11.1", "@emotion/styled": "^11.11.0", - "@labkey/api": "^1.24.0", + "@labkey/api": "^1.34.1", "@mui/material": "^5.0.0", "@mui/styles": "^5.14.7", "@mui/x-data-grid": "^6.0.0", - "chart.js": "^4.4.0", + "chart.js": "^4.4.3", "react": "^17.0.2", "react-chartjs-2": "^5.2.0", "react-dom": "^17.0.2", - "react-hot-loader": "^4.13.0", "react-tooltip": "^5.21.1", "tsv": "^0.2.0", "uuid": "^9.0.0" }, "devDependencies": { - "@labkey/build": "^6.16.0", + "@labkey/build": "^7.3.0", "@types/chart.js": "^2.9.37", "@types/jest": "^29.0.0", "@types/jexl": "^2.3.1", @@ -44,7 +43,7 @@ "jest-cli": "^29.0.0", "jest-environment-jsdom": "^29.7.0", "jest-mock": "^29.0.0", - "rimraf": "^3.0.2", + "rimraf": "^6.0.1", "ts-jest": "^29.0.0" } } diff --git a/mcc/resources/queries/study/demographics/.qview.xml b/mcc/resources/queries/study/demographics/.qview.xml index a5c82e8f7..568812b04 100644 --- a/mcc/resources/queries/study/demographics/.qview.xml +++ b/mcc/resources/queries/study/demographics/.qview.xml @@ -4,6 +4,7 @@ + diff --git a/mcc/src/client/Dashboard/dev.tsx b/mcc/src/client/Dashboard/dev.tsx index 570ce0661..e8f1ee213 100644 --- a/mcc/src/client/Dashboard/dev.tsx +++ b/mcc/src/client/Dashboard/dev.tsx @@ -1,22 +1,10 @@ import React from 'react'; import ReactDOM from 'react-dom'; -import { AppContainer } from 'react-hot-loader'; import { Dashboard } from './Dashboard'; const render = () => { - ReactDOM.render( - - - , - document.getElementById('app') - ) + ReactDOM.render(, document.getElementById('app')); }; -declare const module: any; - -if (module.hot) { - module.hot.accept(); -} - render(); diff --git a/mcc/src/client/Dashboard/webpart/dev.tsx b/mcc/src/client/Dashboard/webpart/dev.tsx index e5db88297..caa130896 100644 --- a/mcc/src/client/Dashboard/webpart/dev.tsx +++ b/mcc/src/client/Dashboard/webpart/dev.tsx @@ -1,17 +1,11 @@ import React from 'react'; import ReactDOM from 'react-dom'; -import { AppContainer } from 'react-hot-loader'; import { App } from '@labkey/api'; -import { Dashboard } from "../Dashboard"; +import { Dashboard } from '../Dashboard'; -App.registerApp('dashboardWebpart', (target: string) => { - ReactDOM.render( - - - , - document.getElementById(target) - ); -}, true /* hot */); +const render = (target: string) => { + ReactDOM.render(, document.getElementById(target)); +}; -declare const module: any; +App.registerApp('dashboardWebpart', render, true /* hot */); \ No newline at end of file diff --git a/mcc/src/client/GeneticsPlot/dev.tsx b/mcc/src/client/GeneticsPlot/dev.tsx index 2a037f6e6..eb49c01c4 100644 --- a/mcc/src/client/GeneticsPlot/dev.tsx +++ b/mcc/src/client/GeneticsPlot/dev.tsx @@ -1,22 +1,10 @@ import React from 'react'; import ReactDOM from 'react-dom'; -import { AppContainer } from 'react-hot-loader'; import { GeneticsPlot } from './GeneticsPlot'; const render = () => { - ReactDOM.render( - - - , - document.getElementById('app') - ) + ReactDOM.render(, document.getElementById('app')); }; -declare const module: any; - -if (module.hot) { - module.hot.accept(); -} - render(); diff --git a/mcc/src/client/GeneticsPlot/webpart/dev.tsx b/mcc/src/client/GeneticsPlot/webpart/dev.tsx index b3653f4f3..de06e8e52 100644 --- a/mcc/src/client/GeneticsPlot/webpart/dev.tsx +++ b/mcc/src/client/GeneticsPlot/webpart/dev.tsx @@ -1,17 +1,11 @@ import React from 'react'; import ReactDOM from 'react-dom'; -import { AppContainer } from 'react-hot-loader'; import { App } from '@labkey/api'; import { GeneticsPlot } from '../GeneticsPlot'; -App.registerApp('mccPcaWebpart', (target: string) => { - ReactDOM.render( - - - , - document.getElementById(target) - ); -}, true /* hot */); +const render = (target: string) => { + ReactDOM.render(, document.getElementById(target)); +}; -declare const module: any; +App.registerApp('mccPcaWebpart', render, true /* hot */); \ No newline at end of file