diff --git a/.gitattributes b/.gitattributes
new file mode 100644
index 0000000..997504b
--- /dev/null
+++ b/.gitattributes
@@ -0,0 +1,2 @@
+# SCM syntax highlighting & preventing 3-way merges
+pixi.lock merge=binary linguist-language=YAML linguist-generated=true -diff
diff --git a/.github/workflows/deploy-apptainer.yml b/.github/workflows/deploy-apptainer.yml
index 0de4f56..e119484 100644
--- a/.github/workflows/deploy-apptainer.yml
+++ b/.github/workflows/deploy-apptainer.yml
@@ -11,11 +11,11 @@ jobs:
       packages: write
     steps:
       - name: checkout repo
-        uses: actions/checkout@v4
+        uses: actions/checkout@v6
         with:
           fetch-depth: 0
 
-      - name: create dockerfile
+      - name: create apptainer recipe
         uses: snakemake/snakemake-github-action@v2
         with:
           directory: .
@@ -23,15 +23,7 @@ jobs:
           install-apptainer: true
           args: "--cores 1"
           task: containerize
-
-      - name: create apptainer recipe
-        shell: bash
-        run: |
-          pip install spython
-          sed -i "2i RUN apt-get update && apt-get install -y curl" Dockerfile
-          spython recipe Dockerfile > apptainer.def
-          sed -i 's/\/environment.yaml\/environment.yaml$/\/environment.yaml/' apptainer.def
-          sed -i 's/^curl /curl -L /' apptainer.def
+          containerize-args: apptainer
 
       - name: create apptainer image
         shell: bash
diff --git a/.github/workflows/snakemake-tests.yml b/.github/workflows/snakemake-tests.yml
index 3ef9daf..ef610a8 100644
--- a/.github/workflows/snakemake-tests.yml
+++ b/.github/workflows/snakemake-tests.yml
@@ -18,7 +18,7 @@ jobs:
   Formatting:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0
       - name: Formatting
@@ -33,7 +33,7 @@ jobs:
   Linting:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
       - name: Lint workflow
         uses: snakemake/snakemake-github-action@v2
         with:
@@ -47,7 +47,7 @@ jobs:
       - Linting
       - Formatting
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
 
       - name: Test workflow
         uses: snakemake/snakemake-github-action@v2
diff --git a/.github/workflows/yaml-formatting.yml b/.github/workflows/yaml-formatting.yml
index bc1e951..aee68f1 100644
--- a/.github/workflows/yaml-formatting.yml
+++ b/.github/workflows/yaml-formatting.yml
@@ -8,7 +8,7 @@ jobs:
   Formatting:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0
       - name: Formatting
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..70a9401
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,8 @@
+# workspace
+.snakemake
+.test/result.*
+.test/apptainer.*
+
+# pixi environments
+.pixi/*
+!.pixi/config.toml
diff --git a/.test/Snakefile b/.test/Snakefile
new file mode 100644
index 0000000..e4b7263
--- /dev/null
+++ b/.test/Snakefile
@@ -0,0 +1,26 @@
+rule all:
+    input:
+        "result.txt",
+        "result.html",
+
+
+rule test:
+    output:
+        "result.txt",
+    conda:
+        "test_env.yaml"
+    shell:
+        "echo 'This is just a test.' > {output}"
+
+
+rule test_wrapper:
+    input:
+        sample=["input.fastq"],
+    output:
+        html="result.html",
+        json="result.json",
+    log:
+        "result.log",
+    threads: 1
+    wrapper:
+        "v9.5.0/bio/fastp"
diff --git a/.test/input.fastq b/.test/input.fastq
new file mode 100644
index 0000000..31d86ea
--- /dev/null
+++ b/.test/input.fastq
@@ -0,0 +1,40 @@
+@read1
+ACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@read2
+TGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@read3
+AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@read4
+TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@read5
+GCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@read6
+ATATATATATATATATATATATATATATATATATATATATATATATAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@read7
+ACACACACACACACACACACACACACACACACACACACACACACACAC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@read8
+GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@read9
+AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@read10
+CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
diff --git a/.test/test_env.yaml b/.test/test_env.yaml
new file mode 100644
index 0000000..d1a577a
--- /dev/null
+++ b/.test/test_env.yaml
@@ -0,0 +1,6 @@
+name: test_env
+channels:
+  - conda-forge
+  - bioconda
+dependencies:
+  - pyyaml=6.0.3
diff --git a/pixi.lock b/pixi.lock
new file mode 100644
index 0000000..d638bf5
--- /dev/null
+++ b/pixi.lock
@@ -0,0 +1,1891 @@
+version: 6
+environments:
+  default:
+    channels:
+    - url: https://conda.anaconda.org/conda-forge/
+    - url: https://conda.anaconda.org/bioconda/
+    options:
+      pypi-prerelease-mode: if-necessary-or-explicit
+    packages:
+      linux-64:
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-20_gnu.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/amply-0.1.6-pyhd8ed1ab_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/annotated-doc-0.0.4-pyhcf101f3_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/annotated-types-0.7.0-pyhd8ed1ab_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/appdirs-1.4.4-pyhd8ed1ab_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/apptainer-1.4.5-h6ccafba_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/argparse-dataclass-2.0.0-pyhd8ed1ab_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/attrs-26.1.0-pyhcf101f3_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/backports.zstd-1.3.0-py313h18e8e13_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/brotli-python-1.2.0-py313hf159716_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hda65f42_9.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2026.4.22-hbd8a1cb_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/certifi-2026.4.22-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/charset-normalizer-3.4.7-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/click-8.3.2-pyhc90fa1f_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/cni-1.0.1-ha975731_1.tar.bz2
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/cni-plugins-1.3.0-ha8f183a_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/coin-or-cbc-2.10.13-h4d16d09_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/coin-or-cgl-0.60.10-hc46dffc_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/coin-or-clp-1.17.11-hc03379b_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/coin-or-osi-0.108.12-hf4fecb4_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/coin-or-utils-2.11.13-hc93afbd_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/coloredlogs-15.0.1-pyhd8ed1ab_4.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/conda-inject-1.3.2-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/configargparse-1.7.5-pyhcf101f3_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/connection_pool-0.0.3-pyhd3deb0d_0.tar.bz2
+      - conda: https://conda.anaconda.org/conda-forge/noarch/docutils-0.22.4-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/dpath-2.2.0-pyha770c72_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/eido-0.2.5-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/fuse-overlayfs-1.16-ha5fcf3e_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/gitdb-4.0.12-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/gitpython-3.1.47-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/gocryptfs-2.6.1-ha770c72_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/greenlet-3.4.0-py313h5d5ffb9_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/h2-4.3.0-pyhcf101f3_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/hpack-4.1.0-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/humanfriendly-10.0-pyh707e725_8.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/hyperframe-6.1.0-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/icu-78.3-h33c6efd_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/idna-3.13-pyhcf101f3_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/immutables-0.21-py313h07c4f96_2.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/jinja2-3.1.6-pyhcf101f3_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/jq-1.8.1-h73b1eb8_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/jsonschema-4.26.0-pyhcf101f3_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/jsonschema-specifications-2025.9.1-pyhcf101f3_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/jupyter_core-5.9.1-pyhc90fa1f_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.45.1-default_hbd61a6d_102.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libarchive-3.8.7-gpl_hc2c16d8_100.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libblas-3.11.0-6_h4a7cf45_openblas.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.11.0-6_h0358290_openblas.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.7.5-hecca717_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libffi-3.5.2-h3435931_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libfuse3-3.18.2-h9a46e9c_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.2.0-he0feb66_18.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-15.2.0-h69a702a_18.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgfortran-15.2.0-h69a702a_18.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-15.2.0-h68bc16d_18.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.2.0-he0feb66_18.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.18-h3b78370_2.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/liblapack-3.11.0-6_h47877c9_openblas.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/liblapacke-3.11.0-6_h6ae95b6_openblas.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.8.3-hb03c661_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libmpdec-4.0.0-hb03c661_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libopenblas-0.3.32-pthreads_h94d23a6_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libseccomp-2.6.0-hb03c661_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.53.0-hf4e2dac_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-15.2.0-h934c35e_18.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.42-h5347b49_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libxml2-16-2.15.3-hca6bf5a_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libxml2-2.15.3-h49c6c72_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.2-h25fd6f3_2.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/logmuse-0.3.0-pyhcf101f3_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/lz4-c-1.10.0-h5888daf_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/lzo-2.10-h280c20c_1002.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/markdown-it-py-4.0.0-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/markupsafe-3.0.3-py313h3dea7bd_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/mdurl-0.1.2-pyhd8ed1ab_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/nbformat-5.10.4-pyhd8ed1ab_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h2d0b736_3.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/numpy-2.4.3-py313hf6604e3_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/oniguruma-6.9.10-hb9d3cd8_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/openssl-3.6.2-h35e630c_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/packaging-25.0-pyh29332c3_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/pandas-2.3.3-py313h08cd8bf_2.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/pephubclient-0.4.4-pyhd8ed1ab_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/peppy-0.40.8-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/platformdirs-4.9.6-pyhcf101f3_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/psutil-7.2.2-py313h54dd161_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/pulp-2.8.0-py313hf1034c9_3.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/pydantic-2.13.3-pyhcf101f3_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/pydantic-core-2.46.3-py313h843e2db_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/pygments-2.20.0-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/pyparsing-3.3.2-pyhcf101f3_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/pysocks-1.7.1-pyha55dd90_7.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/python-3.13.13-h6add32d_100_cp313.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/python-dateutil-2.9.0.post0-pyhe01879c_2.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/python-fastjsonschema-2.21.2-pyhe01879c_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/python-tzdata-2026.1-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/python_abi-3.13-8_cp313.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/pytz-2026.1.post1-pyhcf101f3_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/pyyaml-6.0.3-py313h3dea7bd_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/readline-8.3-h853b02a_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/referencing-0.37.0-pyhcf101f3_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/requests-2.33.1-pyhcf101f3_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/rich-15.0.0-pyhcf101f3_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/rpds-py-0.30.0-py313h843e2db_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/shellingham-1.5.4-pyhd8ed1ab_2.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/six-1.17.0-pyhe01879c_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/slack-sdk-3.41.0-pyhcf101f3_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/slack_sdk-3.41.0-pyh5d57e55_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/smart_open-7.6.0-pyhcf101f3_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/smmap-5.0.3-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/bioconda/noarch/snakemake-9.19.0-hdfd78af_1.conda
+      - conda: https://conda.anaconda.org/bioconda/noarch/snakemake-interface-common-1.23.0-pyh84498cf_0.conda
+      - conda: https://conda.anaconda.org/bioconda/noarch/snakemake-interface-executor-plugins-9.4.0-pyh84498cf_0.conda
+      - conda: https://conda.anaconda.org/bioconda/noarch/snakemake-interface-logger-plugins-2.0.1-pyh84498cf_0.conda
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+  - python >=3.13,<3.14.0a0
+  - python_abi 3.13.* *_cp313
+  license: BSD-2-Clause
+  license_family: BSD
+  size: 64865
+  timestamp: 1756851811052
+- conda: https://conda.anaconda.org/conda-forge/linux-64/yaml-0.2.5-h280c20c_3.conda
+  sha256: 6d9ea2f731e284e9316d95fa61869fe7bbba33df7929f82693c121022810f4ad
+  md5: a77f85f77be52ff59391544bfe73390a
+  depends:
+  - libgcc >=14
+  - __glibc >=2.17,<3.0.a0
+  license: MIT
+  license_family: MIT
+  size: 85189
+  timestamp: 1753484064210
+- conda: https://conda.anaconda.org/conda-forge/noarch/yte-1.9.4-pyhd8ed1ab_0.conda
+  sha256: 1ad021f32290e72b70a84dfe0c9b278c61aaa1254f1e1c287d68c32ee4f1093f
+  md5: 89d5edf5d52d3bc1ed4d7d3feef508ba
+  depends:
+  - argparse-dataclass >=2.0.0,<3
+  - dpath >=2.1,<3.0
+  - python >=3.10
+  - pyyaml >=6.0,<7.0
+  license: MIT
+  license_family: MIT
+  size: 16215
+  timestamp: 1764250734338
+- conda: https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.7-hb78ec9c_6.conda
+  sha256: 68f0206ca6e98fea941e5717cec780ed2873ffabc0e1ed34428c061e2c6268c7
+  md5: 4a13eeac0b5c8e5b8ab496e6c4ddd829
+  depends:
+  - __glibc >=2.17,<3.0.a0
+  - libzlib >=1.3.1,<2.0a0
+  license: BSD-3-Clause
+  license_family: BSD
+  size: 601375
+  timestamp: 1764777111296
diff --git a/pixi.toml b/pixi.toml
new file mode 100644
index 0000000..c6c1766
--- /dev/null
+++ b/pixi.toml
@@ -0,0 +1,16 @@
+[workspace]
+authors = ["m-jahn <jahn@mpusp.mpg.de>"]
+channels = ["conda-forge", "bioconda"]
+name = "mpusp-github-actions"
+platforms = ["linux-64"]
+version = "0.1.0"
+
+[tasks]
+test-workflow = { cmd = "snakemake -d .test -s .test/Snakefile -c 1 --sdm conda" }
+test-containerize = { cmd = "snakemake -d .test -s .test/Snakefile -c 1 --show-failed-logs --containerize apptainer > .test/apptainer.def" }
+test-uidmap = { cmd = "dpkg -l uidmap 2>/dev/null" }
+test-apptainer = { cmd = "cd .test; apptainer build --fakeroot apptainer.sif apptainer.def" }
+
+[dependencies]
+snakemake = ">=9.19.0,<10"
+apptainer = ">=1.4.5,<2"