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The HCMV genome (EF99921) has 168 CDS.
target_id test_stat pval qval
EF999921.1.107 14.8058430514538 0.00011916570542217 0.0117096338308537
EF999921.1.125 14.4989842823081 0.000140235135698847 0.0117096338308537
EF999921.1.63 13.0094926167163 0.000309915903477922 0.015429901729013
EF999921.1.155 12.6800459659633 0.000369578484527256 0.015429901729013
EF999921.1.129 11.813280308036 0.000588097263428098 0.0172288430191257
EF999921.1.154 11.4693684461395 0.000707527205934157 0.0172288430191257
EF999921.1.149 11.4313111358155 0.000722167072657965 0.0172288430191257
EF999921.1.152 11.1497507764455 0.000840429633346815 0.0175439685961148
EF999921.1.64 10.4406449938086 0.0012327221539211 0.0228738444116472
EF999921.1.98 10.0085965789444 0.00155811209824806 0.0260204720407426
EF999921.1.22 8.64357422952791 0.00328216889357347 0.044089251008747
EF999921.1.99 8.57115144332133 0.0034153109772745 0.044089251008747
EF999921.1.9 8.40172378395368 0.00374865373026286 0.044089251008747
EF999921.1.110 8.35147589171946 0.00385374172972113 0.044089251008747
EF999921.1.138 8.30201466424135 0.00396011236605512 0.044089251008747
EF999921.1.10 7.96945408066863 0.00475732841818558 0.0496546153648119
Donor 1 (2dpi) had 2259287 read pairs before Bowtie2 filtering and 1744101 read pairs after.
Donor 1 (6dpi) had 2004530 read pairs before Bowtie2 filtering and 1488833 read pairs after.
Donor 2 (2dpi) had 2730258 read pairs before Bowtie2 filtering and 2382996 read pairs after.
Donor 2 (6dpi) had 2476889 read pairs before Bowtie2 filtering and 1500834 read pairs after.
spades -k 55,77,99,127 -t 2 --only-assembler --pe1-1 HCMV_mapping/SRR5660030.1.mapped.1.fastq --pe1-2 HCMV_mapping/SRR5660030.1.mapped.2.fastq --pe2-1 HCMV_mapping/SRR5660033.1.mapped.1.fastq --pe2-2 HCMV_mapping/SRR5660033.1.mapped.2.fastq --pe3-1 HCMV_mapping/SRR5660044.1.mapped.1.fastq --pe3-2 HCMV_mapping/SRR5660044.1.mapped.2.fastq --pe4-1 HCMV_mapping/SRR5660045.1.mapped.1.fastq --pe4-2 HCMV_mapping/SRR5660045.1.mapped.2.fastq -o HCMV_assembly/
There are 54 contigs > 1000 in the assembly.
There are 195620 bp in the assembly.
sacc pident length qstart qend sstart send bitscore evalue stitle
NC_006273.2 99.434 15900 1 15888 138721 122822 28853 0.0 NC_006273.2 Human herpesvirus 5 strain Merlin
NC_003521.1 83.327 2831 8751 11576 130007 127219 2569 0.0 NC_003521.1 Panine herpesvirus 2 strain Heberling
NC_003521.1 82.562 1858 3813 5644 135403 133566 1594 0.0 NC_003521.1 Panine herpesvirus 2 strain Heberling
NC_003521.1 84.719 1564 11676 13235 127071 125512 1557 0.0 NC_003521.1 Panine herpesvirus 2 strain Heberling
NC_003521.1 84.833 1167 6385 7542 132561 131401 1160 0.0 NC_003521.1 Panine herpesvirus 2 strain Heberling
NC_003521.1 85.942 1003 13386 14383 125347 124356 1057 0.0 NC_003521.1 Panine herpesvirus 2 strain Heberling
NC_003521.1 87.042 710 2571 3275 136787 136080 795 0.0 NC_003521.1 Panine herpesvirus 2 strain Heberling
NC_003521.1 81.085 682 8043 8718 130753 130078 534 7.06e-151 NC_003521.1 Panine herpesvirus 2 strain Heberling
NC_033176.1 74.260 2467 9113 11556 118190 115749 994 0.0 NC_033176.1 Cynomolgus cytomegalovirus isolate 31908
NC_033176.1 79.618 996 3813 4804 123097 122106 708 0.0 NC_033176.1 Cynomolgus cytomegalovirus isolate 31908