NOTES.md

Standup 2016-06-08

Real bamfile will arrive before the weekend.

First standup 2016-06-02.

Makefile and empty data pushed to repo.

Example nextflow flows:

• https://github.com/ewels/NGI-RNAseq
• https://github.com/guigolab/chip-nf

Run the makefile:

$ make -nf src/SV.makefile sample.SV.DEL.filt.bed VPATH=data

Create issues in github and assign them to Pall if we want something.