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lines changed Original file line number Diff line number Diff line change @@ -136,15 +136,17 @@ by e.g. `tail -f .nextflow.log`
136136There are three ways to run the pipeline:
137137``` bash
138138# Local run on node where one is logged in
139- nextflow main.nf -profile local < options>
139+ nextflow main.nf -profile local< cluster > < options>
140140
141141# Called from login node, nextflow will queue SLURM jobs itself
142- nextflow main.nf < options>
142+ nextflow main.nf -profile < cluster > < options>
143143
144144# When running inside a SLURM job nextflow will run on the local node
145- srun nextflow main.nf < options>
145+ srun nextflow main.nf -profile local < cluster > < options>
146146```
147147
148+ Where ` <cluster> ` can be either _ bianca_ or _ milou_ .
149+
148150### Customization
149151
150152Nextflow can pull from github (master branch) so if you specify this repo it will run
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