vt is now installed in the module system on uppmax

viklund · viklund · commit 536354c3fabd · 2016-10-03T13:26:25.000+02:00
diff --git a/bin/vt b/bin/vt
diff --git a/main.nf b/main.nf
@@ -318,6 +318,7 @@ process snpEff {
 
     module 'bioinfo-tools'
     module "$params.modules.snpeff"
+    module "$params.modules.vt"
 
     when: 'snpeff' in workflowSteps
 
diff --git a/nextflow.config b/nextflow.config
@@ -16,6 +16,7 @@ params {
         bedtools = "BEDTools/2.25.0"
         vep = "vep/84"
         snpeff = "snpEff/4.2"
+        vt = "vt/0.5772"
     }
 
     runtime {
