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Config for running entire workflow on one node on bianca.
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nextflow.config

Lines changed: 8 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -50,13 +50,20 @@ profiles {
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process.executor = 'local'
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process.errorStrategy = { $params.runfile != "" ? 'ignore' : 'terminate' }
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}
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localbianca {
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includeConfig 'config/bianca.config'
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process.executor = 'local'
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process.errorStrategy = { $params.runfile != "" ? 'ignore' : 'terminate' }
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}
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}
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executor {
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$slurm {
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queueSize = 30
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}
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$local {
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queueSize = 1
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queueSize = 30
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cpus = 16
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}
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}

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