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‎Comp_doxy_doxy2.m‎

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% at least two oxygen sensors and creates comparison plots between them.
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%
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% AUTHORS:
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% H. Frenzel, J. Sharp, A. Fassbender (NOAA-PMEL), N. Buzby (UW),
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% J. Plant, T. Maurer, Y. Takeshita (MBARI), D. Nicholson (WHOI),
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% and A. Gray (UW)
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% H. Frenzel, J. Sharp, A. Fassbender (NOAA-PMEL), N. Buzby (UW)
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%
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% CITATION:
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% H. Frenzel*, J. Sharp*, A. Fassbender, N. Buzby, J. Plant, T. Maurer,
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% Y. Takeshita, D. Nicholson, A. Gray, 2021. BGC-Argo-Mat: A MATLAB
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% toolbox for accessing and visualizing Biogeochemical Argo data.
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% Zenodo. https://doi.org/10.5281/zenodo.4971318.
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% (*These authors contributed equally to the code.)
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% H. Frenzel, J. Sharp, A. Fassbender, N. Buzby, 2022. OneArgo-Mat:
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% A MATLAB toolbox for accessing and visualizing Argo data.
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% Zenodo. https://doi.org/10.5281/zenodo.6588042
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%
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% LICENSE: bgc_argo_mat_license.m
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% LICENSE: oneargo_mat_license.m
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%
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% DATE: MAY 26, 2022 (Version 1.3)
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% DATE: JUNE 1, 2022 (Version 1.0.1)
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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%% search globally since January 1, 2018 for floats that have at least two

‎README.md‎

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# BGC-Argo Toolbox for MATLAB (BGC-Argo-Mat)
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[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4971318.svg)](https://doi.org/10.5281/zenodo.4971318)
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# Argo Toolbox for MATLAB (OneArgo-Mat)
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[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6588041.svg)](https://doi.org/10.5281/zenodo.6588041)
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## IMPORTANT NOTE
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## NOTE
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This is the final release of this toolbox under the BGC-Argo-Mat name. All future development will be done under the [OneArgo-Mat](https://github.com/NOAA-PMEL/OneArgo-Mat) name.
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This is the first release of this toolbox under the OneArgo-Mat name. It is a further development of the [BGC-Argo-Mat](https://github.com/NOAA-PMEL/BGC_Argo_Mat_Toolbox) toolbox.
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## ABOUT
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This toolbox contains a variety of functions for accessing, processing, and visualizing [Biogeochemical Argo](https://biogeochemical-argo.org) data. Functions are designed to be maximally efficient, to provide access to the most up-to-date data available, and to allow for downloading and plotting of those data based on numerous user-defined conditions. Release 1.3 of this toolbox allows access to all [Argo](https://argo.ucsd.edu/) data.
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This toolbox contains a variety of functions for accessing, processing, and visualizing [Argo](https://argo.ucsd.edu) data, including Core, Deep, and Biogeochemical Argo. Functions are designed to be maximally efficient, to provide access to the most up-to-date data available, and to allow for downloading and plotting of those data based on numerous user-defined conditions.
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## QUICK DEMO
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This <a href="Demo.md">sample code</a> shows an example of selecting floats that match geographic and temporal limits and visualizing some of the data.
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This <a href="Demo.md">sample code</a> shows an example of selecting BGC floats that match geographic and temporal limits and visualizing some of the data.
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## INSTALLATION AND USE
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## REQUIREMENTS
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At least MATLAB R2016b (or any newer release) is needed to use these functions without modifications.<br/>
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At least MATLAB R2019b is needed to overlay profiles of two different types of variables.<br/>
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An Internet connection is needed to get the latest versions of index and Sprof files; but the repository includes versions of these files so that it can be run offline.<br/>
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An Internet connection is needed to get the latest versions of index and profile files; but analysis and visualization functions can be run offline.<br/>
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Memory requirements depend on the number of profiles and variables that are simultaneously loaded into memory.<br/>
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Up to 10 GB local disk space is needed to store all Sprof files of BGC floats.<br/>
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Up to 50 GB local disk space is needed to store all prof files of core and deep floats.<br/>
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## TOOLBOX IN OTHER LANGUAGES
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This toolbox has been translated to R:<br/>
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[R toolbox](https://github.com/euroargodev/BGC-ARGO_R_WORKSHOP)
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[R toolbox](https://github.com/NOAA-PMEL/OneArgo-R)
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A similar toolbox in Python:<br/>
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[Python toolbox](https://github.com/go-bgc/workshop-python)
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Please cite this toolbox as:
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H. Frenzel*, J. Sharp*, A. Fassbender, N. Buzby, J. Plant, T. Maurer, Y. Takeshita, D. Nicholson, A. Gray, 2021. BGC-Argo-Mat: A MATLAB toolbox for accessing and visualizing Biogeochemical Argo data. Zenodo. https://doi.org/10.5281/zenodo.4971318.
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*These authors contributed equally to the code.
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H. Frenzel, J. Sharp, A. Fassbender, N. Buzby, 2022. OneArgo-Mat: A MATLAB toolbox for accessing and visualizing Argo data. Zenodo. https://doi.org/10.5281/zenodo.6588041
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## LEGAL DISCLAIMER
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‎Release_Notes.txt‎

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RELEASE NOTES FOR USERS OF THE OneArgo-Mat TOOLBOX
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Version 1.0.1
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This version is almost identical to version 1.3 of the BGC-Argo-Mat
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toolbox (described below). The only change is that the assigned setting
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of Settings.default_type in initialize_argo was changed from
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'bgc' to 'all', and the header was adapted to OneArgo-Mat.
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==========================================================================
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RELEASE NOTES FOR USERS OF THE BGC_ARGO_MAT TOOLBOX
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Version 1.3

‎Show_deep_floats.m‎

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% has the most deep profiles with oxygen data.
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%
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% AUTHORS:
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% H. Frenzel, J. Sharp, A. Fassbender (NOAA-PMEL), N. Buzby (UW),
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% J. Plant, T. Maurer, Y. Takeshita (MBARI), D. Nicholson (WHOI),
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% and A. Gray (UW)
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% H. Frenzel, J. Sharp, A. Fassbender (NOAA-PMEL), N. Buzby (UW)
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%
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% CITATION:
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% H. Frenzel*, J. Sharp*, A. Fassbender, N. Buzby, J. Plant, T. Maurer,
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% Y. Takeshita, D. Nicholson, A. Gray, 2021. BGC-Argo-Mat: A MATLAB
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% toolbox for accessing and visualizing Biogeochemical Argo data.
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% Zenodo. https://doi.org/10.5281/zenodo.4971318.
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% (*These authors contributed equally to the code.)
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% H. Frenzel, J. Sharp, A. Fassbender, N. Buzby, 2022. OneArgo-Mat:
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% A MATLAB toolbox for accessing and visualizing Argo data.
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% Zenodo. https://doi.org/10.5281/zenodo.6588042
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%
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% LICENSE: bgc_argo_mat_license.m
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% LICENSE: oneargo_mat_license.m
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%
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% DATE: MAY 26, 2022 (Version 1.3)
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% DATE: JUNE 1, 2022 (Version 1.0.1)
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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% search globally and over the whole available time span, find floats that

‎Show_doxy_rmode.m‎

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% that have at least 20 DOXY profiles in R mode.
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%
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% AUTHORS:
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% H. Frenzel, J. Sharp, A. Fassbender (NOAA-PMEL), N. Buzby (UW),
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% J. Plant, T. Maurer, Y. Takeshita (MBARI), D. Nicholson (WHOI),
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% and A. Gray (UW)
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% H. Frenzel, J. Sharp, A. Fassbender (NOAA-PMEL), N. Buzby (UW)
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%
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% CITATION:
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% H. Frenzel*, J. Sharp*, A. Fassbender, N. Buzby, J. Plant, T. Maurer,
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% Y. Takeshita, D. Nicholson, A. Gray, 2021. BGC-Argo-Mat: A MATLAB
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% toolbox for accessing and visualizing Biogeochemical Argo data.
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% Zenodo. https://doi.org/10.5281/zenodo.4971318.
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% (*These authors contributed equally to the code.)
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% H. Frenzel, J. Sharp, A. Fassbender, N. Buzby, 2022. OneArgo-Mat:
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% A MATLAB toolbox for accessing and visualizing Argo data.
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% Zenodo. https://doi.org/10.5281/zenodo.6588042
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%
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% LICENSE: bgc_argo_mat_license.m
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% LICENSE: oneargo_mat_license.m
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%
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% DATE: MAY 26, 2022 (Version 1.3)
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% DATE: JUNE 1, 2022 (Version 1.0.1)
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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global Float;

‎Show_missing_lonlat.m‎

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% This is a change in behavior from versions 1.0 and 1.1 of the toolbox.
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%
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% AUTHORS:
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% H. Frenzel, J. Sharp, A. Fassbender (NOAA-PMEL), N. Buzby (UW),
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% J. Plant, T. Maurer, Y. Takeshita (MBARI), D. Nicholson (WHOI),
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% and A. Gray (UW)
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% H. Frenzel, J. Sharp, A. Fassbender (NOAA-PMEL), N. Buzby (UW)
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%
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% CITATION:
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% H. Frenzel*, J. Sharp*, A. Fassbender, N. Buzby, J. Plant, T. Maurer,
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% Y. Takeshita, D. Nicholson, A. Gray, 2021. BGC-Argo-Mat: A MATLAB
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% toolbox for accessing and visualizing Biogeochemical Argo data.
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% Zenodo. https://doi.org/10.5281/zenodo.4971318.
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% (*These authors contributed equally to the code.)
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% H. Frenzel, J. Sharp, A. Fassbender, N. Buzby, 2022. OneArgo-Mat:
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% A MATLAB toolbox for accessing and visualizing Argo data.
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% Zenodo. https://doi.org/10.5281/zenodo.6588042
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%
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% LICENSE: bgc_argo_mat_license.m
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% LICENSE: oneargo_mat_license.m
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%
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% DATE: MAY 26, 2022 (Version 1.3)
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% DATE: JUNE 1, 2022 (Version 1.0.1)
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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%% Illustration of behavior for versions 1.0 and 1.1 of the toolbox

‎Show_under_ice.m‎

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% when a float is under ice.
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% AUTHORS:
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% H. Frenzel, J. Sharp, A. Fassbender (NOAA-PMEL), N. Buzby (UW),
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% J. Plant, T. Maurer, Y. Takeshita (MBARI), D. Nicholson (WHOI),
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% and A. Gray (UW)
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% H. Frenzel, J. Sharp, A. Fassbender (NOAA-PMEL), N. Buzby (UW)
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%
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% CITATION:
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% H. Frenzel*, J. Sharp*, A. Fassbender, N. Buzby, J. Plant, T. Maurer,
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% Y. Takeshita, D. Nicholson, A. Gray, 2021. BGC-Argo-Mat: A MATLAB
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% toolbox for accessing and visualizing Biogeochemical Argo data.
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% Zenodo. https://doi.org/10.5281/zenodo.4971318.
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% (*These authors contributed equally to the code.)
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% H. Frenzel, J. Sharp, A. Fassbender, N. Buzby, 2022. OneArgo-Mat:
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% A MATLAB toolbox for accessing and visualizing Argo data.
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% Zenodo. https://doi.org/10.5281/zenodo.6588042
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%
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% LICENSE: bgc_argo_mat_license.m
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% LICENSE: oneargo_mat_license.m
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% DATE: MAY 26, 2022 (Version 1.3)
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% DATE: JUNE 1, 2022 (Version 1.0.1)
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%%

‎Tutorial.m‎

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% a discussion of available data, quality control flags etc.
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%
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% AUTHORS:
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% J. Sharp, H. Frenzel, A. Fassbender (NOAA-PMEL), N. Buzby (UW),
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% J. Plant, T. Maurer, Y. Takeshita (MBARI), D. Nicholson (WHOI),
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% and A. Gray (UW)
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% J. Sharp, H. Frenzel, A. Fassbender (NOAA-PMEL), N. Buzby (UW)
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%
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% H. Frenzel*, J. Sharp*, A. Fassbender, N. Buzby, J. Plant, T. Maurer,
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% Y. Takeshita, D. Nicholson, A. Gray, 2021. BGC-Argo-Mat: A MATLAB
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% toolbox for accessing and visualizing Biogeochemical Argo data.
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% Zenodo. https://doi.org/10.5281/zenodo.4971318.
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% (*These authors contributed equally to the code.)
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% H. Frenzel, J. Sharp, A. Fassbender, N. Buzby, 2022. OneArgo-Mat:
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% A MATLAB toolbox for accessing and visualizing Argo data.
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% Zenodo. https://doi.org/10.5281/zenodo.6588042
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%
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% LICENSE: bgc_argo_mat_license.m
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% LICENSE: oneargo_mat_license.m
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% DATE: JUNE 1, 2022 (Version 1.0.1)
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%% Close figures, clean up workspace, clear command window
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‎auxil/calc_auxil.m‎

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% density threshold)
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%
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% J. Sharp, H. Frenzel, A. Fassbender (NOAA-PMEL), N. Buzby (UW),
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% J. Plant, T. Maurer, Y. Takeshita (MBARI), D. Nicholson (WHOI),
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% J. Sharp, H. Frenzel, A. Fassbender (NOAA-PMEL), N. Buzby (UW)
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% H. Frenzel*, J. Sharp*, A. Fassbender, N. Buzby, J. Plant, T. Maurer,
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% Y. Takeshita, D. Nicholson, A. Gray, 2021. BGC-Argo-Mat: A MATLAB
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% toolbox for accessing and visualizing Biogeochemical Argo data.
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% Zenodo. https://doi.org/10.5281/zenodo.4971318.
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% (*These authors contributed equally to the code.)
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% H. Frenzel, J. Sharp, A. Fassbender, N. Buzby, 2022. OneArgo-Mat:
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% A MATLAB toolbox for accessing and visualizing Argo data.
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% Zenodo. https://doi.org/10.5281/zenodo.6588042
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%
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% LICENSE: bgc_argo_mat_license.m
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% LICENSE: oneargo_mat_license.m
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% DATE: JUNE 1, 2022 (Version 1.0.1)
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global Settings;
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‎auxil/check_datenum.m‎

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% e.g., datenum([2020,1,1]) is 737791
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%
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% H. Frenzel, J. Sharp, A. Fassbender (NOAA-PMEL), N. Buzby (UW),
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% J. Plant, T. Maurer, Y. Takeshita (MBARI), D. Nicholson (WHOI),
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% H. Frenzel, J. Sharp, A. Fassbender (NOAA-PMEL), N. Buzby (UW)
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% H. Frenzel*, J. Sharp*, A. Fassbender, N. Buzby, J. Plant, T. Maurer,
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% Y. Takeshita, D. Nicholson, A. Gray, 2021. BGC-Argo-Mat: A MATLAB
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% Zenodo. https://doi.org/10.5281/zenodo.4971318.
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% (*These authors contributed equally to the code.)
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% H. Frenzel, J. Sharp, A. Fassbender, N. Buzby, 2022. OneArgo-Mat:
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% A MATLAB toolbox for accessing and visualizing Argo data.
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% Zenodo. https://doi.org/10.5281/zenodo.6588042
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% LICENSE: oneargo_mat_license.m
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% DATE: JUNE 1, 2022 (Version 1.0.1)
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end
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end

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