Merge pull request #50 from NeotomaDB/data-review-tool-testing

Data review tool tests

Author: shaunhutch

docker/data-review-tool/Dockerfile

@@ -7,11 +7,13 @@ COPY ./docker/data-review-tool/requirements.txt .
 # Install the Python dependencies
 RUN pip install --no-cache-dir -r requirements.txt
 
-RUN git clone https://github.com/NeotomaDB/MetaExtractor
-
 WORKDIR MetaExtractor/
+# Copy the entire repository folder into the container
+COPY src ./src
 
-RUN git switch dev
+# RUN git clone https://github.com/NeotomaDB/MetaExtractor
+# WORKDIR MetaExtractor/
+# RUN git switch dev
 
 # Expose the port your Dash app is running on
 EXPOSE 8050

src/data_review_tool/app.py

@@ -1,4 +1,3 @@
-
 import dash
 from dash import dcc, html
 import dash_bootstrap_components as dbc
@@ -7,29 +6,31 @@
 from pages.navbar import create_navbar
 
 
-app = dash.Dash(__name__, 
-                use_pages=True, 
-                external_stylesheets=[dbc.themes.BOOTSTRAP, "src/data_review_tool/assets/styles.css"], 
-                title="Finding Fossils",
-                suppress_callback_exceptions=True,)
+app = dash.Dash(
+    __name__,
+    use_pages=True,
+    external_stylesheets=[
+        dbc.themes.BOOTSTRAP,
+        "src/data_review_tool/assets/styles.css",
+    ],
+    title="Finding Fossils",
+    suppress_callback_exceptions=True,
+)
 
 server = app.server
 
 navbar = create_navbar()
 
 
 app.layout = html.Div(
-    children=
-    [
-        navbar,
-        dash.page_container
-        ],
+    children=[navbar, dash.page_container],
     style={
         "width": "100%",
         "height": "100%",
-        "overflow": "hidden",}
-    )
+        "overflow": "hidden",
+    },
+)
 app._favicon = "finding-fossils.ico"
 
 if __name__ == "__main__":
-    app.run_server("0.0.0.0", debug=True)
+    app.run_server("0.0.0.0", debug=True, port=8050)

src/data_review_tool/pages/article_review.py

@@ -30,11 +30,11 @@ def layout(gddid=None):
         # get the metadata of the article
         if os.path.exists(os.path.join("data",
                                        "data-review-tool",
-                                       "completed",
+                                       "processed",
                                        f"{gddid}.json")):
             article = open(os.path.join("data",
                                         "data-review-tool",
-                                        "completed",
+                                        "processed",
                                         f"{gddid}.json"), "r")
         else:
             article = open(os.path.join("data",
@@ -499,7 +499,7 @@ def cell_clicked(n_clicks):
         str: The href of the home button
     """
     if n_clicks:
-        return f"http://0.0.0.0:8050/"
+        return f"/"
     else:
         return dash.no_update
 
@@ -843,7 +843,10 @@ def save_submit(submit, save, relevant, data):
         results["last_updated"] = datetime.now().strftime("%Y-%m-%d")
         gddid = results["gddid"]
         data = json.dumps(results)
-        with open(f"data/data-review-tool/completed/{gddid}.json", "w") as f:
+        with open(os.path.join("data",
+                                        "data-review-tool",
+                                        "processed",
+                                        f"{gddid}.json"), "w") as f:
             f.write(data)
         return  dmc.Notification(
                     title="Review Complete!",
@@ -858,7 +861,10 @@ def save_submit(submit, save, relevant, data):
         results["last_updated"] = datetime.now().strftime("%Y-%m-%d")
         gddid = results["gddid"]
         data = json.dumps(results)
-        with open(f"data/data-review-tool/completed/{gddid}.json", "w") as f:
+        with open(os.path.join("data",
+                                        "data-review-tool",
+                                        "processed",
+                                        f"{gddid}.json"), "w") as f:
             f.write(data)
         return  dmc.Notification(
                     title="Article Removed!",
@@ -872,7 +878,10 @@ def save_submit(submit, save, relevant, data):
         results["status"] = "In Progress"
         gddid = results["gddid"]
         data = json.dumps(results)
-        with open(f"data/data-review-tool/completed/{gddid}.json", "w") as f:
+        with open(os.path.join("data",
+                                        "data-review-tool",
+                                        "processed",
+                                        f"{gddid}.json"), "r") as f:
             f.write(data)
         return  dmc.Notification(
                     title="Progress Saved!",