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doc/scripting.md

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@@ -36,7 +36,11 @@ clone, and `script.py` is the name of a script file.
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If you like you can skip the `script.py` parameter, and you'll get an interactive jython prompt.
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bin/jython script.py
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$ bin/jython
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Jython 2.7.0 (default:9987c746f838, Apr 29 2015, 02:25:11)
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[Java HotSpot(TM) 64-Bit Server VM (Oracle Corporation)] on java1.8.0_05
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Type "help", "copyright", "credits" or "license" for more information.
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>>>
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You may have a need to set the Java memory limit, which might be too large or too small for your purposes. To do this, edit JAVAFLAGS in the bin/jython script (or edit the Makefile and force re-creation of bin/jython). The default is currently 14G. For memory-intensive runs it should be set near the actual physical memory available on the machine.
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@@ -68,7 +72,7 @@ source taxonomies (although they needn't be), obtained as follows:
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which fetches a taxonomy from files (in the format specified by this tool,
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see wiki). There can be as many of these retrievals as you like.
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The first argument is a directory name and must end in a '/'.
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The first argument is a directory name and must end in a '`/`'.
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The directory must contain a file 'taxonomy.tsv'.
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The second argument is an 'idspace' prefix that will appear in the

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