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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[1.0.0] - 2026-01-24

Added

GitHub Actions workflows for check, test, and release
Rewrite of entire core functionality:
New subcommands: hash, unique, duplicate, replacing previous flag-based interface.
Multi-threaded parsing
Ability to read FASTX from stdin, http/https URLs, and ssh paths.
Quiet mode (--quiet) to suppress per-record output in hash subcommand.
JSON output mode (--json)
Strict mode (--strict) to fail on non-ACGTUN- bases.

Changed

CLI interface is now subcommand-based
Hashing now uses xxhash3_64
Parsing switched from noodles to paraseq with parallel processing.

Removed

Selectable hash algorithms (--seqhash, --finalhash).
CLI flags --individual, --duplicates, --fasta, and --fastq (replaced by subcommands).