prueba de implementación

Author: RubaGarcia

.github/workflows/run_all_requests_scripts.yml

@@ -15,6 +15,6 @@ jobs:
       - name: Make launcher executable
         run: chmod +x scripts/launch_all_requests_scripts.sh
       - name: Run launcher with SLURM
+        shell: bash -l {0}
         run: |
-          module load miniconda3
           bash scripts/launch_all_requests_scripts.sh

scripts/launch_all_requests_scripts.sh

@@ -11,8 +11,26 @@
 # Get all unique script paths from all requests/*.csv files
 SCRIPTS=$(awk -F',' 'NR>1 && $0!~/^$/ {for(i=1;i<=NF;i++) if($i ~ /scripts\// || $i ~ /derived\// || $i ~ /interpolation\//) print $i}' requests/*.csv | sort | uniq)
 
-source ~/.bashrc
-mamba activate c3s-atlas
+source ~/.bashrc || true
+
+# Try to activate the env robustly across HPCs
+if command -v mamba >/dev/null 2>&1; then
+    mamba activate c3s-atlas || true
+elif command -v conda >/dev/null 2>&1; then
+    # Ensure conda is initialized in non-interactive shells
+    eval "$(conda shell.bash hook)" || true
+    conda activate c3s-atlas || true
+elif command -v micromamba >/dev/null 2>&1; then
+    eval "$(micromamba shell hook -s bash)" || true
+    micromamba activate c3s-atlas || true
+fi
+
+# Verify activation worked
+python -c "import sys; assert sys.prefix and 'c3s-atlas' in sys.prefix" 2>/dev/null || {
+    echo "Failed to activate conda/mamba env 'c3s-atlas'. Ensure it exists or install with:"
+    echo "  conda env create -f environment.yml"
+    exit 1
+}
 
 for script in $SCRIPTS; do
     if [[ -f "$script" ]]; then