Cargo.toml

[package]
name = "single_cell_toolkit"
version = "0.2.0"
authors = ["Gert Hulselmans <gert.hulselmans@kuleuven.be>"]
edition = "2021"

# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html

[dependencies]
ahash = "0.8.11"
bio-types = "1.0"
bstr = "1.12.0"
clap = { version = "4.5.40", features = ["derive"] }
csv = "1.3.1"
grep-cli = "0.1.11"
hashbrown = { version = "0.15.2", features = ["rayon"] }
itertools = "0.14"
itoa = "1.0"
libz-sys = { version = "1.1.20", default = false, features = ["zlib-ng", "static"] }
needletail = { version = "0.6.1", default-features = false, features = ["bzip2", "flate2", "zstd"] }
noodles = { version = "0.99.0", features = ["async", "bam", "bgzf", "cram", "fasta", "sam"] }
noodles-bgzf = { version = "0.41.0", features = ["libdeflate"] }
num-iter = "0.1.45"
rayon = "1.10"
rust-htslib = { version = "*", default-features = false, features = ["libdeflate"] }
serde = { version = "1", features = ["derive"] }
tar = "0.4"
termcolor = "1.4.1"
libdeflater = "1.24.0"

[profile.dev.package."*"]
opt-level = 3

[profile.release]
lto = true
codegen-units = 1