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Commits on Jun 8, 2014

• Merge pull request #148 from mgymrek/master

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  martijnvermaat

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• Merge pull request #161 from gotgenes/feature-affected_coordinates

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Commits on May 20, 2014

• Adds _Record.affected_start and .affected_end.

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Commits on May 16, 2014

• Merge pull request #159 from gotgenes/feature-use_requirements_files

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• Use requirements files to consolidate dependencies.

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• Merge pull request #158 from gotgenes/bugfix-dont_override_setuptools_setup

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Commits on May 15, 2014

• Updates PyPI trove classifiers.

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• Tidies up Python 2.6 dependencies

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• Removes setup import from distutils that overrides setuptools setup.

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Commits on May 14, 2014

• Merge pull request #157 from gotgenes/bugfix-update_fetch_documentation

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  martijnvermaat

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• Fixes fetch documentation in package docstring.

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  gotgenes

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• Merge pull request #156 from gotgenes/feature-zbho_tabix_coordinates

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• Reader.fetch uses zero-based, half-open coordinates.

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  martijnvermaat

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• Merge pull request #155 from gotgenes/feature-indicate_skipped_tests

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Commits on May 13, 2014

• Decorate the TestTabix case rather than its tests.

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• Skips broken test for PyPy.

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• Skips fragile tests broken for Python 3.

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• Marks skipped tests as skipped, not passed.

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Commits on Mar 6, 2014

• updating ploidy vcf example file

  

  mgymrek

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• adding one more test case for non-diploids

  

  mgymrek

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• fixing small typo in elif in test case for aaf

  

  mgymrek

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• making alternate allele frequency work in the case of non-diploid alleles

  

  mgymrek

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Commits on Feb 23, 2014

• Merge pull request #66 from lennax/lenna

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  jamescasbon

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Commits on Feb 22, 2014

• Restore subprocess import to test

  

  Lenna Peterson

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• Merge branch 'master' of https://github.com/jamescasbon/PyVCF into lenna

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  Lenna Peterson

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Commits on Feb 21, 2014

• fix missing .pyx

  

  James Casbon

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Commits on Feb 10, 2014

• bump version

  

  James Casbon

  committed
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• Added tests for walk_together with more complex inputs

  

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  James Casbon

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• Test data for testing the fix for issue #140

  

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  James Casbon

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• finished fixing edge case where 'other' is None

  

  datagram

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  James Casbon

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• Fixed edge case where all inputs are empty, simplified logic

  

  Ben Weisburd

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  James Casbon

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• Fixed spacing and wrapping in utils.py, removed test for old walk_together arg (eq function), fixed edge case in _AltRecord

  

  Ben Weisburd

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  James Casbon

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• Fix for issue #140, add vcf_record_sort_key arg

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  James Casbon

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Commits on Feb 6, 2014

• version 0.6.5

  

  James Casbon

  committed
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• Merge pull request #134 from bow/patch_equalities

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  jamescasbon

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