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Package: ggsurveillance
Title: Tools for Outbreak Investigation/Infectious Disease Surveillance
Version: 0.5.2
Authors@R:
person("Alexander", "Bartel", , "alexander.bartel@fu-berlin.de", role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-1280-6138"))
Description: Create epicurves, epigantt charts, and diverging bar charts
using 'ggplot2'. Prepare data for visualisation or other reporting for
infectious disease surveillance and outbreak investigation (time
series data). Includes tidy functions to solve date based
transformations for common reporting tasks, like (A) seasonal date
alignment for respiratory disease surveillance, (B) date-based case
binning based on specified time intervals like isoweek, epiweek, month
and more, (C) automated detection and marking of the new year based on
the date/datetime axis of the 'ggplot2', (D) labelling of the last
value of a time-series. An introduction on how to use epicurves can
be found on the US CDC website (2012,
<https://www.cdc.gov/training/quicklearns/epimode/index.html>).
License: GPL (>= 3)
URL: https://ggsurveillance.biostats.dev,
https://github.com/biostats-dev/ggsurveillance
BugReports: https://github.com/biostats-dev/ggsurveillance/issues
Depends:
R (>= 4.2.0)
Imports:
cli,
dplyr,
forcats,
ggplot2 (>= 3.5.0),
glue,
ISOweek,
legendry,
lubridate,
rlang,
scales (>= 1.4.0),
stringr,
tidyr,
tidyselect
Suggests:
ggrepel,
Hmisc,
knitr,
outbreaks,
plotly,
rmarkdown,
spelling,
testthat (>= 3.0.0),
vdiffr (>= 1.0.8)
VignetteBuilder:
knitr
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-GB
LazyData: true
NeedsCompilation: no
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3