differences for PR #348

Author: actions-user

09-challenges.md

@@ -246,3 +246,12 @@ def count_colonies_enhanced(image_filename, sigma=1.0, min_colony_size=10, conne
 - These methods are useful for many scientific problems, especially those involving morphometrics.
 
 ::::::::::::::::::::::::::::::::::::::::::::::::::
+
+
+:::::::::::::::::::::::::::::::::::::::: discussion
+
+## Where to go from here?
+
+Take a look at our [curated list of resources](further-reading.md) for further publicly available courses, resources and scientific literature around image processing and more.
+
+::::::::::::::::::::::::::::::::::::::::::::::::::

config.yaml

@@ -71,6 +71,11 @@ episodes:
 
 # Information for Learners
 learners: 
+- prereqs.md
+- discuss.md
+- reference.md
+- further-reading.md
+- edge-detection.md
 
 # Information for Instructors
 instructors: 

further-reading.md

@@ -0,0 +1,31 @@
+---
+title: Further Reading
+permalink: /reading/
+---
+
+## Where to go from here
+
+- [Scikit-image YouTube tutorials](https://www.youtube.com/playlist?list=PLBKcU7Ik-ir9Fi_hM_A6_U2UTpm7ACUtl)
+- [Principles of Scientific Imaging](https://imagej.net/imaging/principles)
+- [Data Handling and Management Training](https://carpentries-incubator.github.io/Data-Management-Training/)
+- [Introduction to Bioimage Analysis by Pete Bankhead](https://bioimagebook.github.io/index.html)
+- [Bio-image Analysis Notebooks by Robert Haase](https://haesleinhuepf.github.io/BioImageAnalysisNotebooks/intro.html)
+- [Introduction to artificial neural networks in Python](https://carpentries-incubator.github.io/machine-learning-neural-python/index.html)
+- [Building Better Research Software](https://carpentries-incubator.github.io/better-research-software/)
+
+## Where to find more help
+
+- [Image.sc Forum](https://image.sc/)
+- [NFDI4BioImage Training Materials collection](https://nfdi4bioimage.github.io/training/readme.html)
+- [Curated list of image analysis resources by EPFL Center for Imaging](https://github.com/EPFL-Center-for-Imaging/awesome-scientific-image-analysis)
+
+## Scientific Literature
+
+- [Digital Image Processing](https://www.imageprocessingplace.com), Textbook by Rafael C. Gonzalez and Richard E. Woods
+- [Checklist for publishing images and analyses ](https://www.nature.com/articles/s41592-023-01987-9)
+- [Studies on application of image processing in various fields: An
+overview](https://dx.doi.org/10.1088/1757-899X/961/1/012006)
+- [REMBI: Recommended Metadata for Biological Images](https://www.nature.com/articles/s41592-021-01166-8)
+- ["Twenty questions": a schema for a set of questions to guide analyses](https://www.nature.com/articles/s41592-023-01919-7)
+- [From cells to pixels: A decision tree for designing bioimage analysis pipelines](https://onlinelibrary.wiley.com/doi/10.1111/jmi.70021)
+

md5sum.txt

@@ -1,7 +1,7 @@
 "file" "checksum" "built" "date"
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-"config.yaml" "101b3ac4b679126bb1f437306eb1b836" "site/built/config.yaml" "2023-04-25"
+"config.yaml" "98f3a48a22d4e5bffc2f387a7549b0c9" "site/built/config.yaml" "2026-02-28"
 "index.md" "6e80c662708984307918adfad711e15f" "site/built/index.md" "2023-07-26"
 "episodes/01-introduction.md" "4fe9db38f75f93b3ffbdb3115d36b802" "site/built/01-introduction.md" "2024-11-28"
 "episodes/02-image-basics.md" "e96045fe38777bd24cf11b76464f2eca" "site/built/02-image-basics.md" "2024-12-01"
@@ -11,11 +11,12 @@
 "episodes/06-blurring.md" "5e65bcd38a39e786b6a6b37775cd5ed9" "site/built/06-blurring.md" "2025-03-28"
 "episodes/07-thresholding.md" "512a1806b8061dded3a68871e7bcdfe9" "site/built/07-thresholding.md" "2025-02-09"
 "episodes/08-connected-components.md" "f599af69b770c7234a4e7d4a06a7f6dd" "site/built/08-connected-components.md" "2024-11-13"
-"episodes/09-challenges.md" "3e95485b1bae2c37538830225ea26598" "site/built/09-challenges.md" "2024-03-12"
+"episodes/09-challenges.md" "7665ef69e61f7ea2184a58162c53aef2" "site/built/09-challenges.md" "2026-02-28"
 "instructors/instructor-notes.md" "e8e378a5dfaec7b2873d788be85003ce" "site/built/instructor-notes.md" "2024-06-18"
+"learners/prereqs.md" "7ca883d3d01d18c98ce7524ed297e56c" "site/built/prereqs.md" "2023-07-26"
 "learners/discuss.md" "ad762c335f99400dc2cd1a8aad36bdbd" "site/built/discuss.md" "2023-07-26"
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 "learners/edge-detection.md" "fdbcee7436e104e6587e1cb40cd37d18" "site/built/edge-detection.md" "2023-08-16"
-"learners/prereqs.md" "7ca883d3d01d18c98ce7524ed297e56c" "site/built/prereqs.md" "2023-07-26"
-"learners/reference.md" "7ae9deea84007c6ed1339955ac23f4b7" "site/built/reference.md" "2023-04-26"
 "learners/setup.md" "36ceef28a0c5cbd8e7f924dc0d151893" "site/built/setup.md" "2025-05-19"
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reference.md

@@ -1,5 +1,5 @@
 ---
-title: 'Reference'
+title: 'Glossary'
 ---
 
 ## Glossary