From 3fc7c17da83496e25d42daf4ed5a8ccd9158191a Mon Sep 17 00:00:00 2001 From: kushalbakshi Date: Tue, 4 Jun 2024 16:35:19 -0400 Subject: [PATCH 1/3] Fix(run_caiman.py): backend for cluster --- element_interface/run_caiman.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/element_interface/run_caiman.py b/element_interface/run_caiman.py index 5ca74d4..8dd24c1 100644 --- a/element_interface/run_caiman.py +++ b/element_interface/run_caiman.py @@ -45,7 +45,7 @@ def run_caiman( opts = params.CNMFParams(params_dict=parameters) c, dview, n_processes = cm.cluster.setup_cluster( - backend="local", n_processes=None, single_thread=True + backend="ipyparallel", n_processes=None, single_thread=False ) try: From 1e06ac8b2ca536b6afc4d4fbfd1d6fcc9ad6bfe4 Mon Sep 17 00:00:00 2001 From: kushalbakshi Date: Tue, 4 Jun 2024 16:40:19 -0400 Subject: [PATCH 2/3] Revert backend to "multiprocessing" --- element_interface/run_caiman.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/element_interface/run_caiman.py b/element_interface/run_caiman.py index 8dd24c1..e5fd18e 100644 --- a/element_interface/run_caiman.py +++ b/element_interface/run_caiman.py @@ -45,7 +45,7 @@ def run_caiman( opts = params.CNMFParams(params_dict=parameters) c, dview, n_processes = cm.cluster.setup_cluster( - backend="ipyparallel", n_processes=None, single_thread=False + backend="multiprocessing", n_processes=None, single_thread=False ) try: From 53502c0818d94e089ae00f71670867f81694c50b Mon Sep 17 00:00:00 2001 From: kushalbakshi Date: Tue, 4 Jun 2024 17:36:01 -0400 Subject: [PATCH 3/3] Fix(run_caiman.py) Remove "single_thread" argument from setup_cluster --- element_interface/run_caiman.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/element_interface/run_caiman.py b/element_interface/run_caiman.py index e5fd18e..d45eda0 100644 --- a/element_interface/run_caiman.py +++ b/element_interface/run_caiman.py @@ -45,7 +45,7 @@ def run_caiman( opts = params.CNMFParams(params_dict=parameters) c, dview, n_processes = cm.cluster.setup_cluster( - backend="multiprocessing", n_processes=None, single_thread=False + backend="multiprocessing", n_processes=None ) try: