diff --git a/source/source_lcao/module_deltaspin/test/basic_test.cpp b/source/source_lcao/module_deltaspin/test/basic_test.cpp
index cf2e776e4e..0c1c3d0c9b 100644
--- a/source/source_lcao/module_deltaspin/test/basic_test.cpp
+++ b/source/source_lcao/module_deltaspin/test/basic_test.cpp
@@ -1,4 +1,4 @@
-#include "../basic_funcs.h"
+#include "source_lcao/module_deltaspin/basic_funcs.h"
 #include "gmock/gmock.h"
 #include "gtest/gtest.h"
 
diff --git a/source/source_lcao/module_deltaspin/test/lambda_loop_helper_test.cpp b/source/source_lcao/module_deltaspin/test/lambda_loop_helper_test.cpp
index 08a25ecf47..0be1e9aff3 100644
--- a/source/source_lcao/module_deltaspin/test/lambda_loop_helper_test.cpp
+++ b/source/source_lcao/module_deltaspin/test/lambda_loop_helper_test.cpp
@@ -1,4 +1,4 @@
-#include "../spin_constrain.h"
+#include "source_lcao/module_deltaspin/spin_constrain.h"
 #include "gmock/gmock.h"
 #include "gtest/gtest.h"
 
diff --git a/source/source_lcao/module_deltaspin/test/spin_constrain_test.cpp b/source/source_lcao/module_deltaspin/test/spin_constrain_test.cpp
index b58437ea8d..56c6100d41 100644
--- a/source/source_lcao/module_deltaspin/test/spin_constrain_test.cpp
+++ b/source/source_lcao/module_deltaspin/test/spin_constrain_test.cpp
@@ -1,4 +1,4 @@
-#include "../spin_constrain.h"
+#include "source_lcao/module_deltaspin/spin_constrain.h"
 
 #include <algorithm>
 #include <string>
diff --git a/source/source_lcao/module_deltaspin/test/template_helpers_test.cpp b/source/source_lcao/module_deltaspin/test/template_helpers_test.cpp
index be5954f859..900aa56f62 100644
--- a/source/source_lcao/module_deltaspin/test/template_helpers_test.cpp
+++ b/source/source_lcao/module_deltaspin/test/template_helpers_test.cpp
@@ -1,7 +1,7 @@
 #include <algorithm>
 #include <string>
 
-#include "../spin_constrain.h"
+#include "source_lcao/module_deltaspin/spin_constrain.h"
 #include "gmock/gmock.h"
 #include "gtest/gtest.h"
 
diff --git a/source/source_lcao/module_hcontainer/test/test_func_folding.cpp b/source/source_lcao/module_hcontainer/test/test_func_folding.cpp
index c96fd77cac..b3e2bb2018 100644
--- a/source/source_lcao/module_hcontainer/test/test_func_folding.cpp
+++ b/source/source_lcao/module_hcontainer/test/test_func_folding.cpp
@@ -1,6 +1,6 @@
 #include "gtest/gtest.h"
-#include "../hcontainer_funcs.h"
-#include "../hcontainer.h"
+#include "source_lcao/module_hcontainer/hcontainer_funcs.h"
+#include "source_lcao/module_hcontainer/hcontainer.h"
 #include <chrono>
 #ifdef _OPENMP
 #include <omp.h>
diff --git a/source/source_lcao/module_hcontainer/test/test_hcontainer_output.cpp b/source/source_lcao/module_hcontainer/test/test_hcontainer_output.cpp
index 5fa66f0b47..66710f8006 100644
--- a/source/source_lcao/module_hcontainer/test/test_hcontainer_output.cpp
+++ b/source/source_lcao/module_hcontainer/test/test_hcontainer_output.cpp
@@ -1,5 +1,5 @@
-#include "../hcontainer.h"
-#include "../output_hcontainer.h"
+#include "source_lcao/module_hcontainer/hcontainer.h"
+#include "source_lcao/module_hcontainer/output_hcontainer.h"
 #include "source_cell/unitcell.h"
 
 #include "gmock/gmock.h"
diff --git a/source/source_lcao/module_hcontainer/test/test_hcontainer_readCSR.cpp b/source/source_lcao/module_hcontainer/test/test_hcontainer_readCSR.cpp
index bb2025f640..d7311078b9 100644
--- a/source/source_lcao/module_hcontainer/test/test_hcontainer_readCSR.cpp
+++ b/source/source_lcao/module_hcontainer/test/test_hcontainer_readCSR.cpp
@@ -1,5 +1,5 @@
-#include "../hcontainer.h"
-#include "../output_hcontainer.h"
+#include "source_lcao/module_hcontainer/hcontainer.h"
+#include "source_lcao/module_hcontainer/output_hcontainer.h"
 #include "source_io/module_output/csr_reader.h"
 #include "prepare_unitcell.h"
 
diff --git a/source/source_lcao/module_hcontainer/test/test_transfer.cpp b/source/source_lcao/module_hcontainer/test/test_transfer.cpp
index b34de091a7..f424faebe1 100644
--- a/source/source_lcao/module_hcontainer/test/test_transfer.cpp
+++ b/source/source_lcao/module_hcontainer/test/test_transfer.cpp
@@ -1,10 +1,10 @@
 #include "gtest/gtest.h"
-#include "../transfer.h"
-#include "../hcontainer.h"
+#include "source_lcao/module_hcontainer/transfer.h"
+#include "source_lcao/module_hcontainer/hcontainer.h"
 #include <chrono>
 #ifdef __MPI
 #include <mpi.h>
-#include "../hcontainer_funcs.h"
+#include "source_lcao/module_hcontainer/hcontainer_funcs.h"
 #endif
 
 // test_size is the number of atoms in the unitcell
diff --git a/source/source_lcao/module_ri/ABFs_Construct-PCA.cpp b/source/source_lcao/module_ri/ABFs_Construct-PCA.cpp
index 51019df1b0..3ad614576c 100644
--- a/source/source_lcao/module_ri/ABFs_Construct-PCA.cpp
+++ b/source/source_lcao/module_ri/ABFs_Construct-PCA.cpp
@@ -1,11 +1,11 @@
 #include "ABFs_Construct-PCA.h"
 
-#include "../../source_base/module_external/lapack_connector.h"
-#include "../../source_base/global_function.h"
-#include "../../source_basis/module_ao/element_basis_index-ORB.h"
-#include "../../source_base/matrix.h"
-#include "../../source_lcao/module_ri/Matrix_Orbs11.h"
-#include "../../source_lcao/module_ri/Matrix_Orbs21.h"
+#include "source_base/module_external/lapack_connector.h"
+#include "source_base/global_function.h"
+#include "source_basis/module_ao/element_basis_index-ORB.h"
+#include "source_base/matrix.h"
+#include "source_lcao/module_ri/Matrix_Orbs11.h"
+#include "source_lcao/module_ri/Matrix_Orbs21.h"
 
 #include <cassert>
 #include <limits>
diff --git a/source/source_lcao/module_ri/ABFs_Construct-PCA.h b/source/source_lcao/module_ri/ABFs_Construct-PCA.h
index b090d2ec1d..62db825cba 100644
--- a/source/source_lcao/module_ri/ABFs_Construct-PCA.h
+++ b/source/source_lcao/module_ri/ABFs_Construct-PCA.h
@@ -1,7 +1,7 @@
 #ifndef ABFS_CONSTRUCT_PCA_H
 #define ABFS_CONSTRUCT_PCA_H
 
-#include "../../source_basis/module_ao/ORB_read.h"
+#include "source_basis/module_ao/ORB_read.h"
 #include "source_cell/unitcell.h"
 #include <vector>
 #include <RI/global/Tensor.h>
diff --git a/source/source_lcao/module_ri/LRI_CV.hpp b/source/source_lcao/module_ri/LRI_CV.hpp
index d30a78cc75..df93eafe91 100644
--- a/source/source_lcao/module_ri/LRI_CV.hpp
+++ b/source/source_lcao/module_ri/LRI_CV.hpp
@@ -10,9 +10,9 @@
 #include "LRI_CV_Tools.h"
 #include "exx_abfs-construct_orbs.h"
 #include "RI_Util.h"
-#include "../../source_basis/module_ao/element_basis_index-ORB.h"
-#include "../../source_base/tool_title.h"
-#include "../../source_base/timer.h"
+#include "source_basis/module_ao/element_basis_index-ORB.h"
+#include "source_base/tool_title.h"
+#include "source_base/timer.h"
 #include "source_hamilt/module_xc/exx_info_ri.h"
 #include <RI/global/Global_Func-1.h>
 #include <omp.h>
diff --git a/source/source_lcao/module_ri/LRI_CV_Tools.hpp b/source/source_lcao/module_ri/LRI_CV_Tools.hpp
index bbf393a6ec..4b718660e3 100644
--- a/source/source_lcao/module_ri/LRI_CV_Tools.hpp
+++ b/source/source_lcao/module_ri/LRI_CV_Tools.hpp
@@ -6,7 +6,7 @@
 #ifndef LRI_CV_TOOLS_HPP
 #define LRI_CV_TOOLS_HPP
 
-#include "../../source_base/mathzone.h"
+#include "source_base/mathzone.h"
 #include "Inverse_Matrix.h"
 #include "LRI_CV_Tools.h"
 #include "RI_Util.h"
diff --git a/source/source_lcao/module_ri/abfs.h b/source/source_lcao/module_ri/abfs.h
index 1d80ca0a69..d3b774d973 100644
--- a/source/source_lcao/module_ri/abfs.h
+++ b/source/source_lcao/module_ri/abfs.h
@@ -1,7 +1,7 @@
 #ifndef ABFS_H
 #define ABFS_H	
 
-#include "../../source_base/vector3.h"
+#include "source_base/vector3.h"
 
 #include <set>
 #include <vector>
diff --git a/source/source_lcao/module_ri/conv_coulomb_pot_k.cpp b/source/source_lcao/module_ri/conv_coulomb_pot_k.cpp
index 1c7c0ecf5b..043f922a94 100644
--- a/source/source_lcao/module_ri/conv_coulomb_pot_k.cpp
+++ b/source/source_lcao/module_ri/conv_coulomb_pot_k.cpp
@@ -1,7 +1,7 @@
 #include "conv_coulomb_pot_k.h"
-#include "../../source_base/constants.h"
+#include "source_base/constants.h"
 #include "source_io/module_parameter/parameter.h"
-#include "../../source_basis/module_ao/ORB_atomic_lm.h"
+#include "source_basis/module_ao/ORB_atomic_lm.h"
 
 namespace Conv_Coulomb_Pot_K
 {
diff --git a/source/source_lcao/module_ri/exx_abfs-construct_orbs.h b/source/source_lcao/module_ri/exx_abfs-construct_orbs.h
index 01b2dc36a9..1eefc9f57a 100644
--- a/source/source_lcao/module_ri/exx_abfs-construct_orbs.h
+++ b/source/source_lcao/module_ri/exx_abfs-construct_orbs.h
@@ -6,7 +6,7 @@
 #include <limits>
 #include <algorithm>
 #include "source_cell/unitcell.h"
-#include "../../source_basis/module_ao/ORB_atomic_lm.h"
+#include "source_basis/module_ao/ORB_atomic_lm.h"
 
 class LCAO_Orbitals;
 
diff --git a/source/source_lcao/module_ri/exx_abfs-io.cpp b/source/source_lcao/module_ri/exx_abfs-io.cpp
index bbdda73897..0f5d280ab9 100644
--- a/source/source_lcao/module_ri/exx_abfs-io.cpp
+++ b/source/source_lcao/module_ri/exx_abfs-io.cpp
@@ -4,9 +4,9 @@
 
 #include "exx_abfs-io.h"
 #include "exx_abfs-jle.h"
-#include "../../source_basis/module_ao/ORB_read.h"
-#include "../../source_base/global_function.h"
-#include "../../source_base/math_integral.h" // mohan add 2021-04-03
+#include "source_basis/module_ao/ORB_read.h"
+#include "source_base/global_function.h"
+#include "source_base/math_integral.h" // mohan add 2021-04-03
 
 
 std::vector<std::vector<std::vector<Numerical_Orbital_Lm>>> Exx_Abfs::IO::construct_abfs(
diff --git a/source/source_lcao/module_ri/exx_abfs-io.h b/source/source_lcao/module_ri/exx_abfs-io.h
index 665d975d61..5c677f9a8e 100644
--- a/source/source_lcao/module_ri/exx_abfs-io.h
+++ b/source/source_lcao/module_ri/exx_abfs-io.h
@@ -5,7 +5,7 @@
 
 #include <map>
 #include <vector>
-#include "../../source_basis/module_ao/ORB_atomic_lm.h"
+#include "source_basis/module_ao/ORB_atomic_lm.h"
 #include "source_cell/klist.h"
 #ifdef __MPI
 #include "mpi.h"
diff --git a/source/source_lcao/module_ri/exx_abfs-jle.cpp b/source/source_lcao/module_ri/exx_abfs-jle.cpp
index 36aee64e98..8f3856ac04 100644
--- a/source/source_lcao/module_ri/exx_abfs-jle.cpp
+++ b/source/source_lcao/module_ri/exx_abfs-jle.cpp
@@ -1,10 +1,10 @@
 #include "exx_abfs-jle.h"
 
 #include "source_io/module_parameter/parameter.h"
-#include "../../source_basis/module_ao/ORB_read.h"
-#include "../../source_cell/unitcell.h"
-#include "../../source_base/mathzone.h"
-#include "../../source_base/math_sphbes.h" // mohan add 2021-05-06
+#include "source_basis/module_ao/ORB_read.h"
+#include "source_cell/unitcell.h"
+#include "source_base/mathzone.h"
+#include "source_base/math_sphbes.h" // mohan add 2021-05-06
 #include "source_base/tool_title.h"
 
 std::vector<std::vector<std::vector<Numerical_Orbital_Lm>>>
diff --git a/source/source_lcao/module_ri/exx_abfs-jle.h b/source/source_lcao/module_ri/exx_abfs-jle.h
index df579e2979..cd6aefcca9 100644
--- a/source/source_lcao/module_ri/exx_abfs-jle.h
+++ b/source/source_lcao/module_ri/exx_abfs-jle.h
@@ -3,7 +3,7 @@
 
 #include "exx_abfs.h"
 #include "source_hamilt/module_xc/exx_info_opt_abfs.h"
-#include "../../source_basis/module_ao/ORB_atomic_lm.h"
+#include "source_basis/module_ao/ORB_atomic_lm.h"
 
 #include <vector>
 
diff --git a/source/source_lcao/module_ri/exx_opt_orb.h b/source/source_lcao/module_ri/exx_opt_orb.h
index f92c87e469..3bf5670ebe 100644
--- a/source/source_lcao/module_ri/exx_opt_orb.h
+++ b/source/source_lcao/module_ri/exx_opt_orb.h
@@ -2,8 +2,8 @@
 #define EXX_OPT_ORB_H
 
 #include "source_hamilt/module_xc/exx_info_opt_abfs.h"
-#include "../../source_base/matrix.h"
-#include "../../source_base/element_basis_index.h"
+#include "source_base/matrix.h"
+#include "source_base/element_basis_index.h"
 #include "source_cell/klist.h"
 #include "source_basis/module_ao/ORB_read.h"
 #include <RI/global/Tensor.h>
diff --git a/source/source_lcao/module_ri/serialization_boost.h b/source/source_lcao/module_ri/serialization_boost.h
index 6c08d6d5c0..585ff36483 100644
--- a/source/source_lcao/module_ri/serialization_boost.h
+++ b/source/source_lcao/module_ri/serialization_boost.h
@@ -11,10 +11,10 @@
 #include <boost/serialization/set.hpp>
 #include <boost/serialization/std::string.hpp>
 
-#include "../../source_base/vector3.h"
+#include "source_base/vector3.h"
 #include "abfs-vector3_order.h"
-#include "../../source_base/matrix.h"
-#include "../../source_base/matrix_wrapper.h"
+#include "source_base/matrix.h"
+#include "source_base/matrix_wrapper.h"
 
 namespace boost
 {
diff --git a/source/source_lcao/module_ri/serialization_cereal.h b/source/source_lcao/module_ri/serialization_cereal.h
index c6d1dcc614..ff14684504 100644
--- a/source/source_lcao/module_ri/serialization_cereal.h
+++ b/source/source_lcao/module_ri/serialization_cereal.h
@@ -9,9 +9,9 @@
 #include <cereal/types/string.hpp>
 #include <cereal/types/functional.hpp>
 
-#include "../../source_base/vector3.h"
+#include "source_base/vector3.h"
 #include "abfs-vector3_order.h"
-#include "../../source_base/matrix.h"
+#include "source_base/matrix.h"
 
 
 
diff --git a/source/source_lcao/module_ri/test/ri_cv_io_test.cpp b/source/source_lcao/module_ri/test/ri_cv_io_test.cpp
index a2c30a2a65..a7eee2a74a 100644
--- a/source/source_lcao/module_ri/test/ri_cv_io_test.cpp
+++ b/source/source_lcao/module_ri/test/ri_cv_io_test.cpp
@@ -4,7 +4,7 @@
 #include <array>
 #include <vector>
 #include <fstream>
-#include "../write_ri_cv.hpp"
+#include "source_lcao/module_ri/write_ri_cv.hpp"
 
 using TC = std::array<int, 3>;
 using TAC = std::pair<int, TC>;