From 6639b9c54fc5fe1159d7ee581c59fd403bb55637 Mon Sep 17 00:00:00 2001
From: Jinzhe Zeng <jinzhe.zeng@rutgers.edu>
Date: Wed, 22 May 2024 18:26:12 -0400
Subject: [PATCH 1/2] docs: update DPA-1 reference

This replace the BibTeX to the preprint with that to the published version (generated by https://github.com/njzjz/wenxian/issues/23#issuecomment-2125874043).
---
 CITATIONS.bib   | 25 ++++++++++++-------------
 doc/credits.rst |  2 +-
 2 files changed, 13 insertions(+), 14 deletions(-)

diff --git a/CITATIONS.bib b/CITATIONS.bib
index a38c22deab..ae2f70ba6f 100644
--- a/CITATIONS.bib
+++ b/CITATIONS.bib
@@ -110,19 +110,18 @@ @article{Wang_NuclFusion_2022_v62_p126013
   doi          = {10.1088/1741-4326/ac888b},
 }
 
-@misc{Zhang_2022_DPA1,
-  annote       = {attention-based descriptor},
-  author       = {
-    Zhang, Duo and Bi, Hangrui and Dai, Fu-Zhi and Jiang, Wanrun and Zhang,
-    Linfeng and Wang, Han
-  },
-  title        = {
-    {DPA-1: Pretraining of Attention-based Deep Potential Model for Molecular
-    Simulation}
-  },
-  publisher    = {arXiv},
-  year         = 2022,
-  doi          = {10.48550/arXiv.2208.08236},
+@Article{Zhang_NpjComputMater_2024_v10_p94,
+  annote       = {DPA-1, attention-based descriptor},
+  author =   {Duo Zhang and Hangrui Bi and Fu-Zhi Dai and Wanrun Jiang and Xinzijian
+            Liu and Linfeng Zhang and Han Wang},
+  title =    {{Pretraining of attention-based deep learning potential model for
+            molecular simulation}},
+  journal =  {Npj Comput. Mater},
+  year =     2024,
+  volume =   10,
+  issue =    1,
+  pages =    94,
+  doi =      {10.1038/s41524-024-01278-7},
 }
 
 @misc{Zhang_2023_DPA2,
diff --git a/doc/credits.rst b/doc/credits.rst
index 64880d9035..1b39dc1e0e 100644
--- a/doc/credits.rst
+++ b/doc/credits.rst
@@ -47,7 +47,7 @@ Cite DeePMD-kit and methods
 .. bibliography::
    :filter: False
 
-   Zhang_2022_DPA1
+   Zhang_NpjComputMater_2024_v10_p94
 
 - If DPA-2 descriptor (`dpa2`) is used,
 

From ea67c35725d3d83e8c4cb464ce0d10ff46743de3 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Wed, 22 May 2024 22:28:48 +0000
Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 CITATIONS.bib | 26 +++++++++++++++-----------
 1 file changed, 15 insertions(+), 11 deletions(-)

diff --git a/CITATIONS.bib b/CITATIONS.bib
index ae2f70ba6f..d5524a14f6 100644
--- a/CITATIONS.bib
+++ b/CITATIONS.bib
@@ -110,18 +110,22 @@ @article{Wang_NuclFusion_2022_v62_p126013
   doi          = {10.1088/1741-4326/ac888b},
 }
 
-@Article{Zhang_NpjComputMater_2024_v10_p94,
+@article{Zhang_NpjComputMater_2024_v10_p94,
   annote       = {DPA-1, attention-based descriptor},
-  author =   {Duo Zhang and Hangrui Bi and Fu-Zhi Dai and Wanrun Jiang and Xinzijian
-            Liu and Linfeng Zhang and Han Wang},
-  title =    {{Pretraining of attention-based deep learning potential model for
-            molecular simulation}},
-  journal =  {Npj Comput. Mater},
-  year =     2024,
-  volume =   10,
-  issue =    1,
-  pages =    94,
-  doi =      {10.1038/s41524-024-01278-7},
+  author       = {
+    Duo Zhang and Hangrui Bi and Fu-Zhi Dai and Wanrun Jiang and Xinzijian Liu
+    and Linfeng Zhang and Han Wang
+  },
+  title        = {
+    {Pretraining of attention-based deep learning potential model for molecular
+    simulation}
+  },
+  journal      = {Npj Comput. Mater},
+  year         = 2024,
+  volume       = 10,
+  issue        = 1,
+  pages        = 94,
+  doi          = {10.1038/s41524-024-01278-7},
 }
 
 @misc{Zhang_2023_DPA2,