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Pull requests: dib-lab/khmer

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Pull requests list

Composition of graphs - new C++ and Python classes
#1392 opened Jun 25, 2016 by ctb Loading…
9 tasks
1
[WIP] Add a -H/--hash-function option.
#1623 opened Feb 16, 2017 by ctb Loading…
8 tasks
1
[WIP] Add FNV1a hash function
#1760 opened Aug 22, 2017 by betatim Loading…
10 tasks
5
[MRG] test, and actually fix, find-nullomers script; add documentation and test input file
#1768 opened Sep 1, 2017 by ctb Loading…
8 tasks done
3
[WIP] Enable banding for computing k-mer abundance distributions Work In Progress
#1767 opened Aug 31, 2017 by standage Loading…
8 tasks
3
Promote error correction scripts from sandbox
#1743 opened Jul 10, 2017 by wltrimbl Loading…
6 of 19 tasks
8
[WIP] Add infrastructure for fixed random seeds in tests
#1655 opened Mar 1, 2017 by betatim Loading…
8 tasks
5
Working branch for fixing Python 3 streaming '--gzip -o -' bug.
#1367 opened May 11, 2016 by ctb Loading…
9 tasks
Add script similar to slice-reads-by-coverage, but support paired reads
#1366 opened May 11, 2016 by adamjorr Loading…
3 of 9 tasks
6
Add functionality to extract unassembled reads from a data set, given an assembly
#1386 opened Jun 15, 2016 by ctb Loading…
9 tasks
1
(Re?)introduce consume_fasta progress indicator
#1410 opened Jul 18, 2016 by standage Loading…
9 tasks
7
rename consume to consume_string
#1589 opened Jan 24, 2017 by ctb Loading…
8 tasks
[WIP] Enable automatic detecting and loading all filter/sketch types Work In Progress
#1717 opened Jun 1, 2017 by standage Loading…
8 tasks
2
Atomic nibble instead of mutex
#1601 opened Jan 30, 2017 by betatim Loading…
8 tasks done
7
Fix compiler and linker warnings
#1605 opened Feb 1, 2017 by betatim Loading…
2 tasks done
14
Experimenting with queues and threads
#1553 opened Dec 13, 2016 by betatim Loading…
8 tasks
18
Open PR for Streaming Partitioning
#1502 opened Nov 3, 2016 by camillescott Loading…
12 tasks
3
boink extensions: or, streaming cDBG stuff
#1821 opened Dec 11, 2017 by camillescott Loading…
8 tasks
Cython tidying Cython
#1774 opened Sep 7, 2017 by camillescott Loading…
8 tasks
4
NOT FOR MERGING -- Testing CQF versus bloom filter and count-min sketch
#1836 opened Feb 4, 2018 by drtamermansour Loading…
8 tasks
1
[WIP] Prototype: count k-mers in banded mode in a single pass Work In Progress
#1818 opened Nov 16, 2017 by standage Loading…
8 tasks
3
switch to using c++ compiler instead of g++ to fix cpp-demos on mac os x
#1865 opened May 19, 2018 by ctb Loading…
5
[MRG] Add "good PR" examples Documentation Ready For Review and Merge!
#1848 opened Mar 14, 2018 by standage Loading…
1 task done
1
Mqf integration2
#1873 opened Jun 18, 2018 by shokrof Loading…
5 tasks done
7
[WIP] Cleaning up build
#1888 opened Feb 21, 2019 by standage Loading…
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