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Monai/README.md

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Monai version of the code to generate the results of
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Tappeiner E, Pöll S, Hönig M, Raudaschl FP, Zaffino P, Spadea FM, Sharp CG, Schubert R, Fritscher K (2018) Multi-organ segmentation of the Head and Neck Area: An efficient hierarchical Neural Networks approach. Submitted to CARS.
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Tappeiner E. et al. (2018) Multi-organ segmentation of the Head and Neck Area: An efficient hierarchical Neural Networks approach. Submitted to CARS.
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###Exec
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python hr3d_pipeline.py -h
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###System
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tested on:
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- 1080GTX with 8Gb
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- 64Gb system memory
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- 12 CPUs (10 Threads)
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###Data
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The preprocessed data (correct fromat) form the MICCAI Head and Neck challenge:
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https://drive.google.com/file/d/1xYwqqYUMx7GCoSrGHPfBLBgRzd_QwN3v/view?usp=sharing
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Raudaschl P. et al. (2017) Evaluation of Segmentation Methods on Head and Neck CT: Auto-Segmentation Challenge 2015. Medical physics. 44. 10.1002/mp.12197.

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