EuroBioC2025OSTAWorkshop/DESCRIPTION at devel · estellad/EuroBioC2025OSTAWorkshop · GitHub

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Package: EuroBioC2025OSTAWorkshop
Title: EuroBioC2025 OSTA workshop on Visium HD cell-level analysis workflow
Version: 2.0.1
Authors@R:
    c(person(given = "Yixing E.",
           family = "Dong",
           role = c("aut", "cre"),
           email = "estelladong729@gmail.com",
           comment = c(ORCID = "0009-0003-5115-5686")),
      person(given = "Ellis",
            family = "Patrick",
            role = c("aut"),
            email = "ellis.patrick@sydney.edu.au"))
Description: EuroBioC2025 OSTA workshop on Visium HD cell-level analysis workflow which includes data processing, cell annotation and spatial analysis.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Depends:
    AUCell,
    Biobase,
    BiocStyle,
    Banksy,
    CARDspa,
    dplyr,
    DropletUtils,
    GenomeInfoDb,
    ggfortify,
    ggplot2,
    ggpubr,
    ggrepel,
    grDevices,
    grid,
    here,
    igraph,
    magick,
    msigdbr,
    OSTA.data,
    pals,
    patchwork,
    pheatmap,
    plotly,
    rlang,
    S4Vectors,
    scater,
    scran,
    scuttle,
    sf,
    SingleCellExperiment,
    sosta,
    spacexr,
    SpatialExperiment,
    spatialFDA,
    SpatialFeatureExperiment,
    spatstat,
    spicyR,
    SpotSweeper,
    Statial,
    stats,
    tidyr,
    tidySpatialExperiment,
    tidyverse,
    Voyager
Suggests:
    knitr,
    rmarkdown,
    pkgdown
URL: https://estellad.github.io/EuroBioC2025_OSTA_Workshop/
BugReports: https://github.com/estellad/EuroBioC2025_OSTA_Workshop/issues/new/choose
VignetteBuilder: knitr
DockerImage: ghcr.io/estellad/eurobioc2025ostaworkshop:latest
Remotes: SydneyBioX/Statial
biocViews: Spatial, SingleCell, Transcriptomics, Software, Visualization
LazyData: true
LazyDataCompression: xz