rename code of conduct file, fix links

Author: fmichonneau

CONDUCT.md CODE_OF_CONDUCT.mdCONDUCT.md renamed to CODE_OF_CONDUCT.md

@@ -81,11 +81,15 @@ summary_cran_results(pkg = c("ggplot2", "dplyr"))
 cran_results(pkg = c("ggplot2", "dplyr"))
 
 ## or by combining them with email addresses
-summary_cran_results(email = "francois.michonneau@gmail.com",
-                     pkg = c("mregions", "ridigbio"))
+summary_cran_results(
+  email = "francois.michonneau@gmail.com",
+  pkg = c("mregions", "ridigbio")
+)
 
-cran_results(email = "francois.michonneau@gmail.com",
-              pkg = c("mregions", "ridigbio"))
+cran_results(
+  email = "francois.michonneau@gmail.com",
+  pkg = c("mregions", "ridigbio")
+)
 ```
 
 You can inspect the logs for the check results using
@@ -106,7 +110,7 @@ packages, using the CRAN database is recommended (it's about 20Mb of data). To
 use the CRAN database, add `src = "crandb"` in your function calls:
 
 ```{r show-cran-db}
-cran_results(pkg = "nlme", src = "crandb")
+cran_results(pkg = "nlme", src = "crandb", progress = FALSE)
 ```
 
 Check out the "Details" section in the help files for more information.
@@ -122,5 +126,5 @@ GitHub.
 ## Code of Conduct
 
 Please note that this project is released with
-a [Contributor Code of Conduct](CONDUCT.md). By participating in this project
+a [Contributor Code of Conduct](https://fmichonneau.github.io/foghorn/CODE_OF_CONDUCT.html). By participating in this project
 you agree to abide by its terms.

README.Rmd

@@ -64,10 +64,9 @@ this result.
 ``` r
 ## Graphical interface
 summary_cran_results(email = "francois.michonneau@gmail.com")
-#> ✔ All clear for foghorn, phylobase, riceware!
-#> ⚠  Packages with warnings on CRAN: 
-#>   - rncl (2)
-#>   - rotl (3)
+#> ✔ All clear for foghorn, phylobase, riceware, rotl!
+#> ⚠  Package with warnings on CRAN: 
+#>   - rncl (4)
 #> ★  Package with notes on CRAN: 
 #>   - rncl (3)
 ```
@@ -86,8 +85,8 @@ cran_results(email = "francois.michonneau@gmail.com")
 #> 1 foghorn       0     0     0     0    12 FALSE           
 #> 2 phylobase     0     0     0     0    12 FALSE           
 #> 3 riceware      0     0     0     0    12 FALSE           
-#> 4 rncl          0     0     2     3     7 FALSE           
-#> 5 rotl          0     0     3     0     9 FALSE
+#> 4 rncl          0     0     4     3     5 FALSE           
+#> 5 rotl          0     0     0     0    12 FALSE
 ```
 
 In addition of your own packages, you can also check the results for any
@@ -97,30 +96,33 @@ other packages that might be of interest to you:
 ## either by themselves
 summary_cran_results(pkg = c("ggplot2", "dplyr"))
 #> ⚠  Package with warnings on CRAN: 
-#>   - ggplot2 (3)
+#>   - ggplot2 (4)
 #> ★  Packages with notes on CRAN: 
 #>   - dplyr (8)
-#>   - ggplot2 (5)
+#>   - ggplot2 (4)
 
 cran_results(pkg = c("ggplot2", "dplyr"))
 #> # A tibble: 2 x 7
 #>   package error  fail  warn  note    ok has_other_issues
 #>   <chr>   <int> <int> <int> <int> <int> <lgl>           
 #> 1 dplyr       0     0     0     8     4 FALSE           
-#> 2 ggplot2     0     0     3     5     4 FALSE
+#> 2 ggplot2     0     0     4     4     4 FALSE
 
 ## or by combining them with email addresses
-summary_cran_results(email = "francois.michonneau@gmail.com",
-                     pkg = c("mregions", "ridigbio"))
-#> ✔ All clear for foghorn, mregions, phylobase, riceware, ridigbio!
-#> ⚠  Packages with warnings on CRAN: 
-#>   - rncl (2)
-#>   - rotl (3)
+summary_cran_results(
+  email = "francois.michonneau@gmail.com",
+  pkg = c("mregions", "ridigbio")
+)
+#> ✔ All clear for foghorn, mregions, phylobase, riceware, ridigbio, rotl!
+#> ⚠  Package with warnings on CRAN: 
+#>   - rncl (4)
 #> ★  Package with notes on CRAN: 
 #>   - rncl (3)
 
-cran_results(email = "francois.michonneau@gmail.com",
-              pkg = c("mregions", "ridigbio"))
+cran_results(
+  email = "francois.michonneau@gmail.com",
+  pkg = c("mregions", "ridigbio")
+)
 #> # A tibble: 7 x 7
 #>   package   error  fail  warn  note    ok has_other_issues
 #>   <chr>     <int> <int> <int> <int> <int> <lgl>           
@@ -129,8 +131,8 @@ cran_results(email = "francois.michonneau@gmail.com",
 #> 3 phylobase     0     0     0     0    12 FALSE           
 #> 4 riceware      0     0     0     0    12 FALSE           
 #> 5 ridigbio      0     0     0     0    12 FALSE           
-#> 6 rncl          0     0     2     3     7 FALSE           
-#> 7 rotl          0     0     3     0     9 FALSE
+#> 6 rncl          0     0     4     3     5 FALSE           
+#> 7 rotl          0     0     0     0    12 FALSE
 ```
 
 You can inspect the logs for the check results using
@@ -142,7 +144,7 @@ You can inspect the logs for the check results using
 #> # A tibble: 1 x 7
 #>   package version result check     flavors           n_flavors message     
 #>   <chr>   <chr>   <chr>  <chr>     <chr>                 <dbl> <chr>       
-#> 1 tidyr   0.8.2   NOTE   data for… r-devel-linux-x8…         5 "     Note:…
+#> 1 tidyr   1.0.0   NOTE   data for… r-devel-linux-x8…         5 "     Note:…
 summary(tidyr_checks)
 #> ★ tidyr - note: data for non-ASCII characters
 #>    ❯ r-devel-linux-x86_64-fedora-clang 
@@ -151,7 +153,7 @@ summary(tidyr_checks)
 #>    ❯ r-release-osx-x86_64 
 #>    ❯ r-oldrel-osx-x86_64 
 #> 
-#>      Note: found 23 marked UTF-8 strings
+#>      Note: found 24 marked UTF-8 strings
 ```
 
 ## Where does the data come from?
@@ -165,11 +167,11 @@ on a large number of packages, using the CRAN database is recommended
 "crandb"` in your function calls:
 
 ``` r
-cran_results(pkg = "nlme", src = "crandb")
+cran_results(pkg = "nlme", src = "crandb", progress = FALSE)
 #> # A tibble: 1 x 7
 #>   package error  fail  warn  note    ok has_other_issues
 #>   <chr>   <int> <int> <int> <int> <int> <lgl>           
-#> 1 nlme        0     0     0     0    12 FALSE
+#> 1 nlme        1     0     0     0    11 FALSE
 ```
 
 Check out the “Details” section in the help files for more information.
@@ -182,5 +184,5 @@ issue](https://github.com/fmichonneau/foghorn/issues/new) on GitHub.
 ## Code of Conduct
 
 Please note that this project is released with a [Contributor Code of
-Conduct](CONDUCT.md). By participating in this project you agree to
-abide by its terms.
+Conduct](https://fmichonneau.github.io/foghorn/CODE_OF_CONDUCT.html). By
+participating in this project you agree to abide by its terms.