This folder contains supporting paper-demo assets (prompt.md, run.sh, score.sh) for local experimentation.
For project 116, the canonical workflow interface is embedded skills, not this examples folder.
Use:
biomcp skill list
biomcp skill <number-or-slug>| Example folder | Canonical skill |
|---|---|
genegpt/ |
09-gene-function-lookup |
geneagent/ |
10-gene-set-analysis |
trialgpt/ |
03-trial-searching (patient matching section) |
pubmed-beyond/ |
11-literature-synthesis |
Use example scripts when you want a quick local benchmark harness with captured outputs/metrics. Use skills when you want the production workflow instructions agents should follow.