This repository contains the analysis described in the article "Phylodynamics of human metapneumovirus and evidence for a duplication-deletion model in G gene variant evolution". Journal of Clinical Virology, October 2025
The NCBI accession numbers and associated metadata for the human metapneumovirus (hMPV) genomes can be found in the file Sample_metadata.xlsx.
Maximum-likelihood trees for hMPV groups A and B are provided in /IQtrees and timed Bayesian trees in /BEAST2. To visualize the trees, you can use software such as FigTree.