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- Using scanpy - follow [Scanpy tutorial](https://scanpy-tutorials.readthedocs.io/en/latest/pbmc3k.html) to generate clusters, then using scVelo should be the same as using Seurat clusters
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- Using scanpy - follow [Scanpy tutorial](https://scanpy-tutorials.readthedocs.io/en/latest/pbmc3k.html) to generate clusters, then using scVelo should be the same as with Seurat clusters that is [documented here](https://github.com/hbc/hbc_10x_scRNAseq_Feinberg_Aortic_cells_from_TKO_and_WT_mouse_hbc04205_3/blob/master/velocyto/feinberg_velocity_analysis_KLF10_KO_vs_Cre_all_results/velocity_jupyter_notebook.pdf) and in the [scVelo documentation](https://scvelo.readthedocs.io/VelocityBasics).
-[R script using Seurat clusters and UMAP dim reduction](https://github.com/hbc/hbc_scrnaseq_tseng_10x_brown_fat_mouse_hbc03764/blob/master/2019_09_tseng_multisample_analysis/analysis_reports/slingshot/VSM_only_slingshot_to_adipo24_UMAP.R)
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