MiSTIC/sample.yaml at master · iric-soft/MiSTIC · GitHub

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ontology: data/ontology

orthology: data/annotation/orthology.txt

annotations:
- id: official_symbol
  name: Human official gene symbol
  path: data/annotation/official_symbol.txt

dataset_annotations:
- id: bodymap_annotation
  name: Bodymap annotation
  path: data/annotation/sample/bodymap.json
datasets:
- id:   bodymap
  name: Illumina Bodymap
  desc: Illumina Bodymap (n=16)
  path: data/datasets/bodymap_illumina_rnaseq.txt
  annr: official_symbol
  annc: bodymap_annotation
  expt: ngs
  txid: '9606'
  type: rpkm
  xfrm: [log]
  tags:
    technology: RNA-Seq

genesets:
- id: go
  name: Gene Ontology
  desc: Gene Ontology
  anot:
    official_symbol: data/genesets/go/official_symbol.txt
- id: msigdb
  name: MSigDB
  desc: Gene sets extracted from MSigDB
  path: data/genesets/msigdb/info.txt
  anot:
    official_symbol: data/genesets/msigdb/official_symbol.txt