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I love bioinformatics, synthetic biology and statistics/machine learning!
:shipit:
I love bioinformatics, synthetic biology and statistics/machine learning!
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  1. align_pc align_pc Public

    Snapshot of my PC/GPU-CUDA workspace for running models/tools for the AlignBio2025 tournament (instead of my regular Mac-ARM setup). You will find code that is compatible with your NVIDIA GPU to ru…

    Jupyter Notebook

  2. CypSurf CypSurf Public

    (DONE) GPU-parallelized implementation of the BSV generation step (from Kuvek et al. 2026). This is basically the code on my PC setup for this side project.

    Python

  3. CYPomeExplorer CYPomeExplorer Public

    (~70% done) Reproduction of the paper by Tea Kuvek et al (Binding Site Vectors Enable Mapping of Cytochrome P450 Functional Landscapes). Link: https://pubs.acs.org/doi/10.1021/acs.jcim.5c02705

    Portugol

  4. petase-snapshot petase-snapshot Public

    Current results of our team's AlignBio2025 Tournament hackathon. (Still messy)

    Jupyter Notebook 1