Package: ggspavis
Version: 1.15.9
Title: Visualization functions for spatial transcriptomics data
Description: Visualization functions for spatial transcriptomics data. Includes 
    functions to generate several types of plots, including spot plots, feature 
    (molecule) plots, reduced dimension plots, spot-level quality control (QC) 
    plots, and feature-level QC plots, for datasets from the 10x Genomics 
    Visium and other technological platforms. Datasets are assumed to be in 
    either SpatialExperiment or SingleCellExperiment format.
Authors@R: c(
    person("Lukas M.", "Weber", 
        email = "lmweb012@gmail.com", 
        role = c("aut", "cre"), 
        comment = c(ORCID = "0000-0002-3282-1730")), 
    person("Helena L.", "Crowell", 
        email = "helena.crowell@uzh.ch", 
        role = c("aut"), 
        comment = c(ORCID = "0000-0002-4801-1767")), 
    person("Yixing E.", "Dong", 
        email = "estelladong729@gmail.com", 
        role = c("aut"), 
        comment = c(ORCID = "0009-0003-5115-5686")))
URL: https://github.com/lmweber/ggspavis
BugReports: https://github.com/lmweber/ggspavis/issues
License: MIT + file LICENSE
Encoding: UTF-8
biocViews:
    Spatial, 
    SingleCell, 
    Transcriptomics, 
    GeneExpression, 
    QualityControl, 
    DimensionReduction
Depends:
    ggplot2
Imports:
    SpatialExperiment, 
    SingleCellExperiment, 
    SummarizedExperiment, 
    ggside, 
    grid, 
    ggrepel, 
    RColorBrewer, 
    scales, 
    grDevices, 
    methods, 
    stats
VignetteBuilder: knitr
Suggests:
    BiocStyle, 
    rmarkdown, 
    knitr, 
    OSTA.data,
    VisiumIO,
    arrow,
    STexampleData, 
    BumpyMatrix, 
    scater, 
    scran, 
    uwot, 
    testthat, 
    patchwork
RoxygenNote: 7.3.3