Fix links after repo transfer (#119)

Author: t-reents

README.md

@@ -1,10 +1,10 @@
 # SeeK-path
 
-Test status for default branch: [![Test status](https://github.com/giovannipizzi/seekpath/actions/workflows/ci.yml/badge.svg)](https://github.com/giovannipizzi/seekpath/actions/workflows/ci.yml)
+Test status for default branch: [![Test status](https://github.com/materialscloud-org/seekpath/actions/workflows/ci.yml/badge.svg)](https://github.com/materialscloud-org/seekpath/actions/workflows/ci.yml)
 
 `SeeK-path` is a python module to obtain band paths in the Brillouin zone of crystal structures.
 
-The definition of k-point labels follows crystallographic convention, as defined and discussed in the [HPKOT paper](http://dx.doi.org/10.1016/j.commatsci.2016.10.015). Moreover, the Bravais lattice is detected properly using the spacegroup symmetry. Also, the suggested band path provided in the [HPKOT paper](http://dx.doi.org/10.1016/j.commatsci.2016.10.015) is returned. Systems without time-reversal and inversion-symmetry are also properly taken into account.
+The definition of k-point labels follows crystallographic convention, as defined and discussed in the [HPKOT paper](https://dx.doi.org/10.1016/j.commatsci.2016.10.015). Moreover, the Bravais lattice is detected properly using the spacegroup symmetry. Also, the suggested band path provided in the [HPKOT paper](https://dx.doi.org/10.1016/j.commatsci.2016.10.015) is returned. Systems without time-reversal and inversion-symmetry are also properly taken into account.
 
 ## Contents
 
@@ -18,12 +18,12 @@ The definition of k-point labels follows crystallographic convention, as defined
 
 If you use this tool, please cite the following work:
 
-- Y. Hinuma, G. Pizzi, Y. Kumagai, F. Oba, I. Tanaka, *Band structure diagram paths based on crystallography*, Comp. Mat. Sci. 128, 140 (2017) ([JOURNAL LINK](http://dx.doi.org/10.1016/j.commatsci.2016.10.015), [arXiv link](https://arxiv.org/abs/1602.06402)).
-- You should also cite [spglib](http://atztogo.github.io/spglib/) that is an essential library used in the implementation: A. Togo, I. Tanaka, "Spglib: a software library for crystal symmetry search", arXiv:1808.01590 (2018) ([spglib arXiv link](https://arxiv.org/abs/1808.01590)).
+- Y. Hinuma, G. Pizzi, Y. Kumagai, F. Oba, I. Tanaka, *Band structure diagram paths based on crystallography*, Comp. Mat. Sci. 128, 140 (2017) ([JOURNAL LINK](https://dx.doi.org/10.1016/j.commatsci.2016.10.015), [arXiv link](https://arxiv.org/abs/1602.06402)).
+- You should also cite [spglib](https://atztogo.github.io/spglib/) that is an essential library used in the implementation: A. Togo, I. Tanaka, "Spglib: a software library for crystal symmetry search", arXiv:1808.01590 (2018) ([spglib arXiv link](https://arxiv.org/abs/1808.01590)).
 
 ## How to install and how to use
 
-Please check the SeeK-path [user guide on ReadTheDocs](http://seekpath.readthedocs.io).
+Please check the SeeK-path [user guide on ReadTheDocs](https://seekpath.readthedocs.io).
 
 ## Acknowledgements
 The `SeeK-path` package was mainly developed by [Giovanni Pizzi](https://github.com/giovannipizzi) and is now maintained by [Timo Reents](https://github.com/t-reents).
@@ -38,7 +38,7 @@ The code is open-source (licensed with a MIT license, see LICENSE.txt).
 
 ## Online service/tool
 
-In the [tools-seekpath](http://www.github.com/materialscloud-org/tools-seekpath/) repository we also provide the code to deploy an online service for the visualization of the band paths and primitive cells of the crystal structures. A live version is hosted on the [Materials Cloud](http://www.materialscloud.org/tools/seekpath/) web portal.
+In the [tools-seekpath](https://www.github.com/materialscloud-org/tools-seekpath/) repository we also provide the code to deploy an online service for the visualization of the band paths and primitive cells of the crystal structures. A live version is hosted on the [Materials Cloud](https://www.materialscloud.org/tools/seekpath/) web portal.
 
 The following is a screenshot of the selection window:
 

docs/Makefile

@@ -9,7 +9,7 @@ BUILDDIR      = build
 
 # User-friendly check for sphinx-build
 ifeq ($(shell which $(SPHINXBUILD) >/dev/null 2>&1; echo $$?), 1)
-$(error The '$(SPHINXBUILD)' command was not found. Make sure you have Sphinx installed, then set the SPHINXBUILD environment variable to point to the full path of the '$(SPHINXBUILD)' executable. Alternatively you can add the directory with the executable to your PATH. If you don't have Sphinx installed, grab it from http://sphinx-doc.org/)
+$(error The '$(SPHINXBUILD)' command was not found. Make sure you have Sphinx installed, then set the SPHINXBUILD environment variable to point to the full path of the '$(SPHINXBUILD)' executable. Alternatively you can add the directory with the executable to your PATH. If you don't have Sphinx installed, grab it from https://sphinx-doc.org/)
 endif
 
 # Internal variables.

docs/source/conf.py

@@ -185,7 +185,7 @@
 # If true, an OpenSearch description file will be output, and all pages will
 # contain a <link> tag referring to it.  The value of this option must be the
 # base URL from which the finished HTML is served.
-html_use_opensearch = 'http://seekpath.readthedocs.io'
+html_use_opensearch = 'https://seekpath.readthedocs.io'
 
 # This is the file name suffix for HTML files (e.g. ".xhtml").
 # html_file_suffix = None

docs/source/index.rst

@@ -2,7 +2,7 @@
 `SeeK-path`
 ###########
 
-.. _GitHub: http://github.com/giovannipizzi/seekpath
+.. _GitHub: https://github.com/materialscloud-org/seekpath
 
 
 .. toctree::

docs/source/maindoc.rst

@@ -120,14 +120,14 @@ AiiDA integration
 If you use AiiDA, you might be interested to use the wrappers that are provided in AiiDA.
 
 The documentation of the methods can be found at
-http://aiida-core.readthedocs.io/en/latest/datatypes/kpoints.html
+https://aiida-core.readthedocs.io/en/latest/datatypes/kpoints.html
 
 
-.. _HPKOT paper: http://dx.doi.org/10.1016/j.commatsci.2016.10.015
-.. _JOURNAL LINK: http://dx.doi.org/10.1016/j.commatsci.2016.10.015
+.. _HPKOT paper: https://dx.doi.org/10.1016/j.commatsci.2016.10.015
+.. _JOURNAL LINK: https://dx.doi.org/10.1016/j.commatsci.2016.10.015
 .. _arXiv link: https://arxiv.org/abs/1602.06402
-.. _spglib: http://atztogo.github.io/spglib/
-.. _Materials Cloud: http://www.materialscloud.org/tools/seekpath/
+.. _spglib: https://atztogo.github.io/spglib/
+.. _Materials Cloud: https://www.materialscloud.org/tools/seekpath/
 .. _docker hub: https://hub.docker.com/r/giovannipizzi/seekpath/
-.. _AiiDA: http://www.aiida.net
+.. _AiiDA: https://www.aiida.net
 .. _spglib arXiv link: https://arxiv.org/abs/1808.01590

pyproject.toml

@@ -35,8 +35,8 @@ dependencies = [
 license = {text = "The MIT license"}
 
 [project.urls]
-Homepage = "http://github.com/giovannipizzi/seekpath"
-Downloads = "https://github.com/giovannipizzi/seekpath/archive/v2.2.0.tar.gz"
+Homepage = "https://github.com/materialscloud-org/seekpath"
+Downloads = "https://github.com/materialscloud-org/seekpath/archive/v2.2.0.tar.gz"
 
 [project.optional-dependencies]
 bz = [

seekpath/hpkot/__init__.py

@@ -10,7 +10,7 @@
 .. note:: the list of point coordinates and example POSCAR files in
   the band_path_data subfolder have been provided by Yoyo Hinuma,
   Kyoto University, Japan. The POSCARs have been retrieved from
-  the Materials Project (http://materialsproject.org).
+  the Materials Project (https://materialsproject.org).
 """