fix: secrets baseline and run imports

Author: mmalenic

.pre-commit-config.yaml

@@ -10,8 +10,11 @@ repos:
     rev: v1.4.0
     hooks:
       - id: detect-secrets
-        args:
-          ["--baseline", ".secrets.baseline"]
+        name: 'detect-secrets'
+        args: [ '--exclude-files', '.*\.ipynb$', "--baseline", ".secrets.baseline" ]
+      - id: detect-secrets
+        name: 'detect-secrets-jupyter'
+        args: [ '--exclude-files', '.*[^i][^p][^y][^n][^b]$', '--exclude-lines', '"(hash|id|image/\w+)":.*', "--baseline", ".secrets.baseline" ]
         exclude: package.lock.json
 
   - repo: https://github.com/psf/black-pre-commit-mirror

.secrets.baseline

@@ -109,62 +109,14 @@
     },
     {
       "path": "detect_secrets.filters.heuristic.is_templated_secret"
+    },
+    {
+      "path": "detect_secrets.filters.regex.should_exclude_file",
+      "pattern": [
+        ".*\\.ipynb$"
+      ]
     }
   ],
-  "results": {
-    "classify.ipynb": [
-      {
-        "type": "Hex High Entropy String",
-        "filename": "classify.ipynb",
-        "hashed_secret": "c16e72b051efba5c8f1476711fddf6eea36dbbcc",
-        "is_verified": false,
-        "line_number": 9
-      },
-      {
-        "type": "Hex High Entropy String",
-        "filename": "classify.ipynb",
-        "hashed_secret": "42236a0b0e18f43d75ce023f931ce8daca6da361",
-        "is_verified": false,
-        "line_number": 94
-      },
-      {
-        "type": "Hex High Entropy String",
-        "filename": "classify.ipynb",
-        "hashed_secret": "58754f0e68a7183da7b670bb52b3dca14d09b8aa",
-        "is_verified": false,
-        "line_number": 187
-      },
-      {
-        "type": "Hex High Entropy String",
-        "filename": "classify.ipynb",
-        "hashed_secret": "f422b8a846deb56e1306382db2fabfdcc9aaee1a",
-        "is_verified": false,
-        "line_number": 243
-      },
-      {
-        "type": "Hex High Entropy String",
-        "filename": "classify.ipynb",
-        "hashed_secret": "76729d05b6725796d8a85d1ccbaecad2404d1b91",
-        "is_verified": false,
-        "line_number": 311
-      }
-    ],
-    "run.ipynb": [
-      {
-        "type": "Hex High Entropy String",
-        "filename": "run.ipynb",
-        "hashed_secret": "f422b8a846deb56e1306382db2fabfdcc9aaee1a",
-        "is_verified": false,
-        "line_number": 117
-      },
-      {
-        "type": "Hex High Entropy String",
-        "filename": "run.ipynb",
-        "hashed_secret": "76729d05b6725796d8a85d1ccbaecad2404d1b91",
-        "is_verified": false,
-        "line_number": 137
-      }
-    ]
-  },
-  "generated_at": "2023-10-19T07:09:12Z"
+  "results": {},
+  "generated_at": "2023-10-20T02:21:36Z"
 }

run.ipynb

@@ -5,13 +5,7 @@
    "execution_count": null,
    "outputs": [],
    "source": [
-    "import numpy as np\n",
-    "from sklearn.metrics import accuracy_score\n",
     "from dataset.alternative_treatment_names import AlternativeTreatmentNames\n",
-    "\n",
-    "import random\n",
-    "\n",
-    "import pandas as pd\n",
     "from dataset.mutation_landscape_cancer_type import MutationLandscapeCancerType\n",
     "\n",
     "mutation_landscape = MutationLandscapeCancerType()\n",
@@ -43,9 +37,6 @@
    "execution_count": null,
    "outputs": [],
    "source": [
-    "from dataset.utils import process_plus\n",
-    "from dataset.alternative_treatment_names import AlternativeTreatmentNames\n",
-    "\n",
     "from dataset.treatment_source_dataset import TreatmentSourceDataset\n",
     "from dataset.gene_pair_dataset import GenePairDataset\n",
     "\n",
@@ -90,13 +81,7 @@
     "import warnings\n",
     "warnings.filterwarnings('ignore')\n",
     "\n",
-    "from sklearn.metrics import hamming_loss\n",
-    "from classifier.util import accuracy_score\n",
-    "from sklearn.metrics import classification_report\n",
-    "from classifier import util\n",
-    "\n",
     "import seaborn as sns\n",
-    "import matplotlib.pyplot as plt\n",
     "\n",
     "asyncio.get_event_loop().set_debug(True)\n",
     "\n",
@@ -114,7 +99,7 @@
    "metadata": {
     "collapsed": false
    },
-   "id": "10862cfef3f8b10"
+   "id": "ce6b7b462d828e33"
   },
   {
    "cell_type": "code",