inab-inhouse-analyses/_quarto.yml at main · natanast/inab-inhouse-analyses · GitHub

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project:
  type: website
  output-dir: docs

execute:
  freeze: auto

website:
  title: "INAB In-House Analysis"
  navbar:
    left:
      - text: Home
        href: index.qmd
      - text: Data Analytics
        menu:
          - text: Data & Metadata
            href: qmd/data_cleaning.qmd
          - text: Unix Commands
            href: qmd/unix.qmd
      - text: Manuals for analysis
        menu:
          - text: bcl convert
            href: qmd/bcl_convert.qmd
          - text: bases2fastq
            href: qmd/bases2fastq.qmd
          - text: fastqc
            href: qmd/fastqc.qmd
          - text: Merge lanes
            href: qmd/merge_lanes.qmd
          - text: RNAseq analysis
            href: qmd/rnaseq.qmd
          - text: ENA
            href: qmd/ena_deposit.qmd
          - text: ERGO-ii
            href: qmd/ergo.qmd
          - text: SARS-Cov-2
            href: qmd/sars.qmd


  page-footer:
    border: true
    left: "This page is built with [Quarto](https://quarto.org/)."
    right: "[License](https://github.com/natanast/inab-inhouse-analyses/blob/main/LICENSE)"

format:
  html:
    theme: [morph, sass/theme-light.scss]
    code-block-bg: true
    code-block-border-left: "#2b5769"
    toc: true