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update user example files for new ss3 release
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‎model_files/empirical_wtatage_and_age_selex/control.ss‎

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#V3.30.24.00;_safe;_compile_date:_Sep 10 2025;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_13.2
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#V3.30.24.1;_safe;_compile_date:_Sep 18 2025;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_13.2
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#_Stock_Synthesis_is_a_work_of_the_U.S._Government_and_is_not_subject_to_copyright_protection_in_the_United_States.
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#_Foreign_copyrights_may_apply._See_copyright.txt_for_more_information.
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#_User_support_available_at:_https://groups.google.com/g/ss3-forum_and_NMFS.Stock.Synthesis@noaa.gov
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#
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# all recruitment deviations
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# 1971R 1972R 1973R 1974R 1975R 1976R 1977R 1978R 1979R 1980R 1981R 1982R 1983R 1984R 1985R 1986R 1987R 1988R 1989R 1990R 1991R 1992R 1993R 1994R 1995R 1996R 1997R 1998R 1999R 2000R 2001R 2002F 2003F 2004F 2005F 2006F 2007F 2008F 2009F 2010F 2011F
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# 0.176698 -0.0973696 0.0412266 -0.306445 0.323772 0.166354 0.520409 -0.518174 0.589927 -0.218282 0.1607 -0.22527 -0.425356 -0.613602 0.581518 0.401875 0.08011 0.184684 -0.355314 0.590307 -0.608506 -0.111496 -0.752272 0.371696 -0.64191 0.873917 0.894654 -0.414999 -0.679658 0.251121 -0.240316 0 0 0 0 0 0 0 0 0 0
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# 0.176698 -0.0973701 0.0412278 -0.306447 0.323773 0.166354 0.520409 -0.518173 0.589927 -0.21828 0.160699 -0.225269 -0.425357 -0.613601 0.581517 0.401875 0.0801101 0.184684 -0.355314 0.590307 -0.608506 -0.111497 -0.75227 0.371695 -0.64191 0.873918 0.894654 -0.414998 -0.67966 0.251122 -0.240317 0 0 0 0 0 0 0 0 0 0
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#
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#Fishing Mortality info
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0.3 # F ballpark value in units of annual_F
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# F rates by fleet x season
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#_year: 1971 1972 1973 1974 1975 1976 1977 1978 1979 1980 1981 1982 1983 1984 1985 1986 1987 1988 1989 1990 1991 1992 1993 1994 1995 1996 1997 1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011
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# seas: 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
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# FISHERY1 0 0.00180743 0.00908379 0.00916525 0.0185756 0.0285502 0.0393459 0.051413 0.064905 0.0923267 0.126049 0.140174 0.15739 0.175532 0.200239 0.227826 0.275742 0.292529 0.310526 0.309006 0.300748 0.216125 0.231959 0.232711 0.243185 0.265999 0.215258 0.228959 0.230706 0.241815 0.238986 6.9302e-06 0.0130126 0.0236767 0.0307297 0.0355005 0.0389046 0.041662 0.0441234 0.046385 0.0485331
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# FISHERY1 0 0.00180743 0.00908379 0.00916525 0.0185756 0.0285502 0.0393459 0.051413 0.064905 0.0923268 0.126049 0.140174 0.15739 0.175532 0.200239 0.227826 0.275742 0.292529 0.310526 0.309006 0.300748 0.216125 0.231959 0.232711 0.243185 0.265999 0.215258 0.228959 0.230706 0.241815 0.238986 6.9302e-06 0.0130126 0.0236767 0.0307297 0.0355005 0.0389046 0.041662 0.0441234 0.046385 0.0485331
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#
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#_Q_setup for fleets with cpue or survey or deviation data
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#_1: fleet number
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# 3 SURVEY2 LenSelex
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# 1 FISHERY1 AgeSelex
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-1000 10 0 -1000 3 0 -2 0 0 0 0 0 0 0 # AgeSel_P1_FISHERY1(1)
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-10 10 8.12395 3 3 0 2 0 0 1948 2011 4 0 0 # AgeSel_P2_FISHERY1(1)
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-10 10 8.12487 3 3 0 2 0 0 1948 2011 4 0 0 # AgeSel_P2_FISHERY1(1)
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-10 10 1.03306 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P3_FISHERY1(1)
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-10 10 0.0878902 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P4_FISHERY1(1)
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-10 10 0.854569 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P5_FISHERY1(1)
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-10 10 0.087889 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P4_FISHERY1(1)
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-10 10 0.85457 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P5_FISHERY1(1)
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-10 10 0.327464 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P6_FISHERY1(1)
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-10 10 0.0965212 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P7_FISHERY1(1)
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-10 10 0.0911904 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P8_FISHERY1(1)
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-10 10 -0.0448499 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P9_FISHERY1(1)
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-10 10 0.0965222 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P7_FISHERY1(1)
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-10 10 0.0911893 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P8_FISHERY1(1)
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-10 10 -0.0448492 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P9_FISHERY1(1)
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-10 10 0.537346 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P10_FISHERY1(1)
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-10 10 0 0 3 0 -5 0 0 0 0 0.25 0 0 # AgeSel_P11_FISHERY1(1)
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# 2 SURVEY1 AgeSelex
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-1000 10 0 -1000 3 0 -2 0 0 0 0 0 0 0 # AgeSel_P1_SURVEY1(2)
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-10 10 7.48644 3 3 0 2 0 0 1948 2011 4 0 0 # AgeSel_P2_SURVEY1(2)
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-10 10 0.63943 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P3_SURVEY1(2)
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-10 10 0.846605 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P4_SURVEY1(2)
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-10 10 -0.418 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P5_SURVEY1(2)
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-10 10 0.867063 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P6_SURVEY1(2)
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-10 10 7.48874 3 3 0 2 0 0 1948 2011 4 0 0 # AgeSel_P2_SURVEY1(2)
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-10 10 0.639429 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P3_SURVEY1(2)
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-10 10 0.846604 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P4_SURVEY1(2)
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-10 10 -0.417999 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P5_SURVEY1(2)
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-10 10 0.867061 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P6_SURVEY1(2)
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-10 10 -2.30094 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P7_SURVEY1(2)
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-10 10 2.13313 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P8_SURVEY1(2)
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-10 10 -0.124585 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P9_SURVEY1(2)
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-10 10 -0.0880592 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P10_SURVEY1(2)
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-10 10 -0.0880594 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P10_SURVEY1(2)
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-10 10 0 0 3 0 -5 0 0 0 0 0.25 0 0 # AgeSel_P11_SURVEY1(2)
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# 3 SURVEY2 AgeSelex
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0 40 0 5 99 0 -99 0 0 0 0 0 0 0 # minage@sel=1_SURVEY2(3)

‎model_files/empirical_wtatage_and_age_selex/data.ss‎

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#V3.30.24.00;_safe;_compile_date:_Sep 10 2025;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_13.2
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#V3.30.24.1;_safe;_compile_date:_Sep 18 2025;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_13.2
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#_Stock_Synthesis_is_a_work_of_the_U.S._Government_and_is_not_subject_to_copyright_protection_in_the_United_States.
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#_Foreign_copyrights_may_apply._See_copyright.txt_for_more_information.
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#_User_support_available_at:_https://groups.google.com/g/ss3-forum_and_NMFS.Stock.Synthesis@noaa.gov
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#_User_info_available_at:_https://nmfs-ost.github.io/ss3-website/
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#_Source_code_at:_https://github.com/nmfs-ost/ss3-source-code
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#_Start_time: Thu Sep 11 14:51:16 2025
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#_Start_time: Mon Sep 22 14:31:41 2025
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#_echo_input_data
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#C data file for simple example
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#V3.30.24.00;_safe;_compile_date:_Sep 10 2025;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_13.2
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#V3.30.24.1;_safe;_compile_date:_Sep 18 2025;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_13.2
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1971 #_StartYr
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2001 #_EndYr
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1 #_Nseas

‎model_files/empirical_wtatage_and_age_selex/forecast.ss‎

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#V3.30.24.00;_safe;_compile_date:_Sep 10 2025;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_13.2
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#V3.30.24.1;_safe;_compile_date:_Sep 18 2025;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_13.2
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#C generic forecast file
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# for all year entries except rebuilder; enter either: actual year, -999 for styr, 0 for endyr, neg number for rel. endyr
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1 # Benchmarks: 0=skip; 1=calc F_spr,F_Btgt,F_msy; 2=calc F_spr,F0.1,F_msy; 3=add F_Blimit;
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1 # Control rule method (0: none; 1: ramp does catch=f(SSB), buffer on F; 2: ramp does F=f(SSB), buffer on F; 3: ramp does catch=f(SSB), buffer on catch; 4: ramp does F=f(SSB), buffer on catch)
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# values for top, bottom and buffer required, but not used when Policy=0
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0.4 # Control rule inflection for constant F (as frac of HCR_anchor, see below); must be > control rule cutoff
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0.1 # Control rule cutoff for no F (as frac of HCR_anchor, e.g. 0.10)
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0.1 # Control rule cutoff for no F (as frac of HCR_anchor, e.g. 0.10); negative value to also invoke read of protection level
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# placeholder for AK protection level: control rule level below which F goes to 0.0001
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0.75 # Buffer: enter Control rule target as fraction of Flimit (e.g. 0.75), negative value invokes list of [year, scalar]. -year fills from year to YrMax
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# Also see HCR_anchor below to use virgin vs benchmark SSB or Bmsy as basis for inflection and cutoff
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#

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