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update user example files for new ss3 release (#50)
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
1 parent 79e435d commit bcc93c1

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lines changed

model_files/empirical_wtatage_and_age_selex/control.ss

Lines changed: 14 additions & 14 deletions
Original file line numberDiff line numberDiff line change
@@ -1,8 +1,8 @@
1-
#V3.30.23.1;_safe;_compile_date:_Dec 5 2024;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_13.2
1+
#V3.30.23.2;_safe;_compile_date:_Apr 17 2025;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_13.2
22
#_Stock_Synthesis_is_a_work_of_the_U.S._Government_and_is_not_subject_to_copyright_protection_in_the_United_States.
33
#_Foreign_copyrights_may_apply._See_copyright.txt_for_more_information.
4-
#_User_support_available_at:NMFS.Stock.Synthesis@noaa.gov
5-
#_User_info_available_at:https://vlab.noaa.gov/group/stock-synthesis
4+
#_User_support_available_at:_https://groups.google.com/g/ss3-forum_and_NMFS.Stock.Synthesis@noaa.gov
5+
#_User_info_available_at:_https://nmfs-ost.github.io/ss3-website/
66
#_Source_code_at:_https://github.com/nmfs-ost/ss3-source-code
77

88
#C growth parameters are estimated
@@ -152,7 +152,7 @@
152152
#
153153
# all recruitment deviations
154154
# 1971R 1972R 1973R 1974R 1975R 1976R 1977R 1978R 1979R 1980R 1981R 1982R 1983R 1984R 1985R 1986R 1987R 1988R 1989R 1990R 1991R 1992R 1993R 1994R 1995R 1996R 1997R 1998R 1999R 2000R 2001R 2002F 2003F 2004F 2005F 2006F 2007F 2008F 2009F 2010F 2011F
155-
# 0.176698 -0.0973695 0.0412266 -0.306445 0.323772 0.166354 0.520409 -0.518174 0.589927 -0.218282 0.1607 -0.225269 -0.425356 -0.613602 0.581517 0.401875 0.0801098 0.184684 -0.355314 0.590307 -0.608506 -0.111497 -0.752271 0.371696 -0.641909 0.873917 0.894654 -0.414999 -0.679658 0.251122 -0.240317 0 0 0 0 0 0 0 0 0 0
155+
# 0.176698 -0.09737 0.0412273 -0.306446 0.323773 0.166354 0.520409 -0.518174 0.589927 -0.218282 0.1607 -0.22527 -0.425356 -0.613601 0.581517 0.401876 0.0801097 0.184684 -0.355315 0.590307 -0.608507 -0.111496 -0.752271 0.371696 -0.64191 0.873917 0.894655 -0.414999 -0.679658 0.251122 -0.240317 0 0 0 0 0 0 0 0 0 0
156156
#
157157
#Fishing Mortality info
158158
0.3 # F ballpark value in units of annual_F
@@ -244,27 +244,27 @@
244244
# 3 SURVEY2 LenSelex
245245
# 1 FISHERY1 AgeSelex
246246
-1000 10 0 -1000 3 0 -2 0 0 0 0 0 0 0 # AgeSel_P1_FISHERY1(1)
247-
-10 10 8.1248 3 3 0 2 0 0 1948 2011 4 0 0 # AgeSel_P2_FISHERY1(1)
247+
-10 10 8.12597 3 3 0 2 0 0 1948 2011 4 0 0 # AgeSel_P2_FISHERY1(1)
248248
-10 10 1.03306 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P3_FISHERY1(1)
249249
-10 10 0.0878898 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P4_FISHERY1(1)
250-
-10 10 0.854569 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P5_FISHERY1(1)
250+
-10 10 0.85457 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P5_FISHERY1(1)
251251
-10 10 0.327464 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P6_FISHERY1(1)
252-
-10 10 0.0965215 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P7_FISHERY1(1)
253-
-10 10 0.0911899 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P8_FISHERY1(1)
254-
-10 10 -0.0448495 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P9_FISHERY1(1)
252+
-10 10 0.0965219 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P7_FISHERY1(1)
253+
-10 10 0.0911893 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P8_FISHERY1(1)
254+
-10 10 -0.0448487 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P9_FISHERY1(1)
255255
-10 10 0.537346 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P10_FISHERY1(1)
256256
-10 10 0 0 3 0 -5 0 0 0 0 0.25 0 0 # AgeSel_P11_FISHERY1(1)
257257
# 2 SURVEY1 AgeSelex
258258
-1000 10 0 -1000 3 0 -2 0 0 0 0 0 0 0 # AgeSel_P1_SURVEY1(2)
259-
-10 10 7.48729 3 3 0 2 0 0 1948 2011 4 0 0 # AgeSel_P2_SURVEY1(2)
260-
-10 10 0.63943 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P3_SURVEY1(2)
259+
-10 10 7.48883 3 3 0 2 0 0 1948 2011 4 0 0 # AgeSel_P2_SURVEY1(2)
260+
-10 10 0.639429 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P3_SURVEY1(2)
261261
-10 10 0.846605 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P4_SURVEY1(2)
262-
-10 10 -0.418 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P5_SURVEY1(2)
263-
-10 10 0.867063 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P6_SURVEY1(2)
262+
-10 10 -0.417999 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P5_SURVEY1(2)
263+
-10 10 0.867062 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P6_SURVEY1(2)
264264
-10 10 -2.30094 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P7_SURVEY1(2)
265265
-10 10 2.13313 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P8_SURVEY1(2)
266266
-10 10 -0.124586 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P9_SURVEY1(2)
267-
-10 10 -0.0880591 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P10_SURVEY1(2)
267+
-10 10 -0.0880592 0 3 6 2 0 0 1948 2011 4 0 0 # AgeSel_P10_SURVEY1(2)
268268
-10 10 0 0 3 0 -5 0 0 0 0 0.25 0 0 # AgeSel_P11_SURVEY1(2)
269269
# 3 SURVEY2 AgeSelex
270270
0 40 0 5 99 0 -99 0 0 0 0 0 0 0 # minage@sel=1_SURVEY2(3)

model_files/empirical_wtatage_and_age_selex/data.ss

Lines changed: 5 additions & 5 deletions
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@@ -1,14 +1,14 @@
1-
#V3.30.23.1;_safe;_compile_date:_Dec 5 2024;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_13.2
1+
#V3.30.23.2;_safe;_compile_date:_Apr 17 2025;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_13.2
22
#_Stock_Synthesis_is_a_work_of_the_U.S._Government_and_is_not_subject_to_copyright_protection_in_the_United_States.
33
#_Foreign_copyrights_may_apply._See_copyright.txt_for_more_information.
4-
#_User_support_available_at:NMFS.Stock.Synthesis@noaa.gov
5-
#_User_info_available_at:https://vlab.noaa.gov/group/stock-synthesis
4+
#_User_support_available_at:_https://groups.google.com/g/ss3-forum_and_NMFS.Stock.Synthesis@noaa.gov
5+
#_User_info_available_at:_https://nmfs-ost.github.io/ss3-website/
66
#_Source_code_at:_https://github.com/nmfs-ost/ss3-source-code
77

8-
#_Start_time: Tue Dec 10 16:50:40 2024
8+
#_Start_time: Thu Apr 17 19:46:02 2025
99
#_echo_input_data
1010
#C data file for simple example
11-
#V3.30.23.1;_safe;_compile_date:_Dec 5 2024;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_13.2
11+
#V3.30.23.2;_safe;_compile_date:_Apr 17 2025;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_13.2
1212
1971 #_StartYr
1313
2001 #_EndYr
1414
1 #_Nseas

model_files/empirical_wtatage_and_age_selex/forecast.ss

Lines changed: 1 addition & 1 deletion
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@@ -1,4 +1,4 @@
1-
#V3.30.23.1;_safe;_compile_date:_Dec 5 2024;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_13.2
1+
#V3.30.23.2;_safe;_compile_date:_Apr 17 2025;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_13.2
22
#C generic forecast file
33
# for all year entries except rebuilder; enter either: actual year, -999 for styr, 0 for endyr, neg number for rel. endyr
44
1 # Benchmarks: 0=skip; 1=calc F_spr,F_btgt,F_msy; 2=calc F_spr,F0.1,F_msy; 3=add F_Blimit;

model_files/empirical_wtatage_and_age_selex/ss_summary.sso

Lines changed: 46 additions & 46 deletions
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@@ -1,20 +1,20 @@
1-
#V3.30.23.1;_safe;_compile_date:_Dec 5 2024;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_13.2
1+
#V3.30.23.2;_safe;_compile_date:_Apr 17 2025;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_13.2
22
data.ss #_DataFile
33
control.ss #_Control
4-
Run_Date: Tue Dec 10 16:50:21 2024
5-
Final_phase: 5 N_iterations: 537
4+
Run_Date: Thu Apr 17 19:45:43 2025
5+
Final_phase: 5 N_iterations: 525
66
#_LIKELIHOOD
77
Label logL*Lambda
88
TOTAL_LogL 566.276
99
Catch 4.76946e-12
10-
Survey -3.3095
10+
Survey -3.30951
1111
Age_comp 574.325
1212
Recruitment -6.5708
1313
InitEQ_regime 0
14-
Sum_recdevs 0
14+
Sum_recdevs -2.22045e-16
1515
Forecast_Recruitment 0
1616
Parm_priors 1.82927
17-
Parm_softbounds 0.00204516
17+
Parm_softbounds 0.00204625
1818
Parm_devs 0
1919
F_Ballpark 0
2020
Crash_Pen 0
@@ -50,32 +50,32 @@ SR_sigmaR 0.6 0 Fix 0.3
5050
SR_regime 0 0 Fix 0.5
5151
SR_autocorr 0 0 Fix 0
5252
Main_RecrDev_1971 0.176698 0.32518 Act 0.51767
53-
Main_RecrDev_1972 -0.0973695 0.43989 Act 0.490263
54-
Main_RecrDev_1973 0.0412266 0.37052 Act 0.504123
55-
Main_RecrDev_1974 -0.306445 0.409353 Act 0.469355
56-
Main_RecrDev_1975 0.323772 0.29971 Act 0.532377
53+
Main_RecrDev_1972 -0.09737 0.439891 Act 0.490263
54+
Main_RecrDev_1973 0.0412273 0.37052 Act 0.504123
55+
Main_RecrDev_1974 -0.306446 0.409354 Act 0.469355
56+
Main_RecrDev_1975 0.323773 0.29971 Act 0.532377
5757
Main_RecrDev_1976 0.166354 0.427444 Act 0.516635
5858
Main_RecrDev_1977 0.520409 0.269416 Act 0.552041
5959
Main_RecrDev_1978 -0.518174 0.432152 Act 0.448183
6060
Main_RecrDev_1979 0.589927 0.226089 Act 0.558993
6161
Main_RecrDev_1980 -0.218282 0.436545 Act 0.478172
6262
Main_RecrDev_1981 0.1607 0.268498 Act 0.51607
63-
Main_RecrDev_1982 -0.225269 0.368701 Act 0.477473
63+
Main_RecrDev_1982 -0.22527 0.368701 Act 0.477473
6464
Main_RecrDev_1983 -0.425356 0.393321 Act 0.457464
65-
Main_RecrDev_1984 -0.613602 0.412709 Act 0.43864
65+
Main_RecrDev_1984 -0.613601 0.412709 Act 0.43864
6666
Main_RecrDev_1985 0.581517 0.242256 Act 0.558152
67-
Main_RecrDev_1986 0.401875 0.301593 Act 0.540187
68-
Main_RecrDev_1987 0.0801098 0.330597 Act 0.508011
67+
Main_RecrDev_1986 0.401876 0.301593 Act 0.540188
68+
Main_RecrDev_1987 0.0801097 0.330597 Act 0.508011
6969
Main_RecrDev_1988 0.184684 0.26954 Act 0.518468
70-
Main_RecrDev_1989 -0.355314 0.376884 Act 0.464469
70+
Main_RecrDev_1989 -0.355315 0.376884 Act 0.464468
7171
Main_RecrDev_1990 0.590307 0.196573 Act 0.559031
72-
Main_RecrDev_1991 -0.608506 0.380754 Act 0.439149
73-
Main_RecrDev_1992 -0.111497 0.277506 Act 0.48885
72+
Main_RecrDev_1991 -0.608507 0.380754 Act 0.439149
73+
Main_RecrDev_1992 -0.111496 0.277506 Act 0.48885
7474
Main_RecrDev_1993 -0.752271 0.356991 Act 0.424773
7575
Main_RecrDev_1994 0.371696 0.218111 Act 0.53717
76-
Main_RecrDev_1995 -0.641909 0.365414 Act 0.435809
76+
Main_RecrDev_1995 -0.64191 0.365414 Act 0.435809
7777
Main_RecrDev_1996 0.873917 0.221095 Act 0.587392
78-
Main_RecrDev_1997 0.894654 0.275725 Act 0.589465
78+
Main_RecrDev_1997 0.894655 0.275725 Act 0.589465
7979
Main_RecrDev_1998 -0.414999 0.389194 Act 0.4585
8080
Main_RecrDev_1999 -0.679658 0.402964 Act 0.432034
8181
Main_RecrDev_2000 0.251122 0.363345 Act 0.525112
@@ -93,29 +93,29 @@ ForeRecr_2011 0 0.6 Act 0.5
9393
#_Catchability
9494
LnQ_base_SURVEY1(2) 0.971014 0.245495 Act 0.664251
9595
Q_extraSD_SURVEY1(2) 0 0 Fix 0
96-
LnQ_base_SURVEY2(3) -6.59077 0.28087 Act 0.0341026
96+
LnQ_base_SURVEY2(3) -6.59077 0.28087 Act 0.0341027
9797
#_Selectivity
9898
AgeSel_P1_FISHERY1(1) 0 0 Fix 0.990099
99-
AgeSel_P2_FISHERY1(1) 8.1248 36.1706 Act 0.90624
100-
AgeSel_P3_FISHERY1(1) 1.03306 0.604159 Act 0.551653
99+
AgeSel_P2_FISHERY1(1) 8.12597 36.1805 Act 0.906299
100+
AgeSel_P3_FISHERY1(1) 1.03306 0.604158 Act 0.551653
101101
AgeSel_P4_FISHERY1(1) 0.0878898 0.521804 Act 0.504394
102-
AgeSel_P5_FISHERY1(1) 0.854569 0.459255 Act 0.542728
102+
AgeSel_P5_FISHERY1(1) 0.85457 0.459255 Act 0.542728
103103
AgeSel_P6_FISHERY1(1) 0.327464 0.406276 Act 0.516373
104-
AgeSel_P7_FISHERY1(1) 0.0965215 0.483646 Act 0.504826
105-
AgeSel_P8_FISHERY1(1) 0.0911899 0.547324 Act 0.504559
106-
AgeSel_P9_FISHERY1(1) -0.0448495 0.544519 Act 0.497758
104+
AgeSel_P7_FISHERY1(1) 0.0965219 0.483646 Act 0.504826
105+
AgeSel_P8_FISHERY1(1) 0.0911893 0.547323 Act 0.504559
106+
AgeSel_P9_FISHERY1(1) -0.0448487 0.544519 Act 0.497758
107107
AgeSel_P10_FISHERY1(1) 0.537346 0.293823 Act 0.526867
108108
AgeSel_P11_FISHERY1(1) 0 0 Fix 0.5
109109
AgeSel_P1_SURVEY1(2) 0 0 Fix 0.990099
110-
AgeSel_P2_SURVEY1(2) 7.48729 44.6188 Act 0.874365
111-
AgeSel_P3_SURVEY1(2) 0.63943 0.616534 Act 0.531971
110+
AgeSel_P2_SURVEY1(2) 7.48883 44.6393 Act 0.874441
111+
AgeSel_P3_SURVEY1(2) 0.639429 0.616533 Act 0.531971
112112
AgeSel_P4_SURVEY1(2) 0.846605 0.615515 Act 0.54233
113-
AgeSel_P5_SURVEY1(2) -0.418 0.652826 Act 0.4791
114-
AgeSel_P6_SURVEY1(2) 0.867063 0.545146 Act 0.543353
113+
AgeSel_P5_SURVEY1(2) -0.417999 0.652825 Act 0.4791
114+
AgeSel_P6_SURVEY1(2) 0.867062 0.545146 Act 0.543353
115115
AgeSel_P7_SURVEY1(2) -2.30094 1.20776 Act 0.384953
116116
AgeSel_P8_SURVEY1(2) 2.13313 1.22111 Act 0.606656
117117
AgeSel_P9_SURVEY1(2) -0.124586 0.562962 Act 0.493771
118-
AgeSel_P10_SURVEY1(2) -0.0880591 0.380924 Act 0.495597
118+
AgeSel_P10_SURVEY1(2) -0.0880592 0.380924 Act 0.495597
119119
AgeSel_P11_SURVEY1(2) 0 0 Fix 0.5
120120
minage@sel=1_SURVEY2(3) 0 0 Fix 0
121121
maxage@sel=1_SURVEY2(3) 0 0 Fix 0
@@ -167,25 +167,25 @@ SSB_2011 10174.4 2327.08
167167
#_Recruitment
168168
Recr_Virgin 6748.46 222.593
169169
Recr_Initial 6748.46 222.593
170-
Recr_1971 6726.22 2123.76
171-
Recr_1972 5113.82 2248.24
170+
Recr_1971 6726.22 2123.75
171+
Recr_1972 5113.81 2248.24
172172
Recr_1973 5872.36 2157.78
173-
Recr_1974 4141.88 1688.91
173+
Recr_1974 4141.87 1688.9
174174
Recr_1975 7767.18 2290.28
175175
Recr_1976 6615.48 2820.04
176176
Recr_1977 9379.49 2471.54
177177
Recr_1978 3296.48 1427.28
178178
Recr_1979 9889.77 2172.9
179179
Recr_1980 4355.3 1900.13
180-
Recr_1981 6255.68 1660.75
180+
Recr_1981 6255.68 1660.76
181181
Recr_1982 4153.85 1525.75
182182
Recr_1983 3311.32 1298.51
183-
Recr_1984 2661.13 1107.72
184-
Recr_1985 8484.67 2013.23
183+
Recr_1984 2661.14 1107.72
184+
Recr_1985 8484.66 2013.23
185185
Recr_1986 6786.56 2043.99
186186
Recr_1987 4651 1544.63
187-
Recr_1988 4789.76 1267.92
188-
Recr_1989 2559.24 986.279
187+
Recr_1988 4789.77 1267.92
188+
Recr_1989 2559.24 986.278
189189
Recr_1990 6031.06 1120.56
190190
Recr_1991 1683.17 682.291
191191
Recr_1992 2602.94 723.46
@@ -233,7 +233,7 @@ SPRratio_1992 1.33037 0.0210309
233233
SPRratio_1993 1.35326 0.0222816
234234
SPRratio_1994 1.35428 0.0250219
235235
SPRratio_1995 1.36796 0.0289974
236-
SPRratio_1996 1.39455 0.0329243
236+
SPRratio_1996 1.39455 0.0329244
237237
SPRratio_1997 1.32904 0.0462428
238238
SPRratio_1998 1.34912 0.0516428
239239
SPRratio_1999 1.35154 0.0609264
@@ -364,29 +364,29 @@ OFLCatch_2004 1491.22 392.235
364364
OFLCatch_2005 1691.86 419.764
365365
OFLCatch_2006 1894.83 450.377
366366
OFLCatch_2007 1967.91 454.347
367-
OFLCatch_2008 2020.64 452.477
367+
OFLCatch_2008 2020.64 452.476
368368
OFLCatch_2009 2133.72 472.002
369369
OFLCatch_2010 2205.83 479.037
370370
OFLCatch_2011 2303.48 494.572
371371
#_Extra_stdev
372-
AgeSelex_std_1_Fem_A_1 0.0506311 0.0201687
372+
AgeSelex_std_1_Fem_A_1 0.0506312 0.0201687
373373
AgeSelex_std_1_Fem_A_3 0.155324 0.0494469
374374
AgeSelex_std_1_Fem_A_5 0.506512 0.120143
375375
AgeSelex_std_1_Fem_A_7 0.611099 0.184483
376376
AgeSelex_std_1_Fem_A_8 0.584297 0.17168
377-
AgeSelex_std_1_Mal_A_1 0.0506311 0.0201687
377+
AgeSelex_std_1_Mal_A_1 0.0506312 0.0201687
378378
AgeSelex_std_1_Mal_A_3 0.155324 0.0494469
379379
AgeSelex_std_1_Mal_A_5 0.506512 0.120143
380380
AgeSelex_std_1_Mal_A_7 0.611099 0.184483
381381
AgeSelex_std_1_Mal_A_8 0.584297 0.17168
382382
NatAge_std_1_Fem_A_1 776.278 419.766
383383
NatAge_std_1_Fem_A_2 1152.75 528.215
384-
NatAge_std_1_Fem_A_14 89.0083 37.2753
384+
NatAge_std_1_Fem_A_14 89.0083 37.2752
385385
NatAge_std_1_Fem_A_26 2.33456 1.37378
386386
NatAge_std_1_Fem_A_40 3.66729 1.51712
387387
NatAge_std_1_Mal_A_1 776.278 419.766
388388
NatAge_std_1_Mal_A_2 1152.75 528.215
389-
NatAge_std_1_Mal_A_14 89.0083 37.2753
389+
NatAge_std_1_Mal_A_14 89.0083 37.2752
390390
NatAge_std_1_Mal_A_26 2.33456 1.37378
391391
NatAge_std_1_Mal_A_40 3.66729 1.51712
392392
ln(SPB)_1971 10.82 0.0329843
@@ -479,7 +479,7 @@ TotBio_2007 26690.3 0.0
479479
TotBio_2008 28094.5 0.0
480480
TotBio_2009 29510.8 0.0
481481
TotBio_2010 30912.3 0.0
482-
TotBio_2011 32309.9 0.0
482+
TotBio_2011 32309.8 0.0
483483
TotCatch_Virgin 0 0.0
484484
TotCatch_Initial 0 0.0
485485
TotCatch_1971 0 0.0

model_files/empirical_wtatage_and_age_selex/starter.ss

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#V3.30.23.1;_safe;_compile_date:_Dec 5 2024;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_13.2
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#V3.30.23.2;_safe;_compile_date:_Apr 17 2025;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_13.2
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#_Stock_Synthesis_is_a_work_of_the_U.S._Government_and_is_not_subject_to_copyright_protection_in_the_United_States.
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#_Foreign_copyrights_may_apply._See_copyright.txt_for_more_information.
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#_User_support_available_at:NMFS.Stock.Synthesis@noaa.gov
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#_User_info_available_at:https://vlab.noaa.gov/group/stock-synthesis
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#_User_support_available_at:_https://groups.google.com/g/ss3-forum_and_NMFS.Stock.Synthesis@noaa.gov
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#_User_info_available_at:_https://nmfs-ost.github.io/ss3-website/
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#_Source_code_at:_https://github.com/nmfs-ost/ss3-source-code
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#C starter comment here
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1 # F_std_scaling: 0=no scaling; 1=F/Fspr; 2=F/Fmsy; 3=F/Fbtgt; where F means annual F_std, Fmsy means F_std@msy; values >=11 invoke N multiyr using 10s and 100s digit; append .1 to invoke log(ratio)
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0.08 # MCMC output detail: integer part (0=default; 1=adds obj func components; 2= +write_report_for_each_mceval); and decimal part (added to SR_LN(R0) on first call to mcmc)
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0 # ALK tolerance ***disabled in code
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-1 # random number seed for bootstrap data (-1 to use long(time) as seed): # 1733849440
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-1 # random number seed for bootstrap data (-1 to use long(time) as seed): # 1744919162
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3.30 # check value for end of file and for version control

model_files/selex_age_example/forecast.ss

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#V3.30.23.1;_safe;_compile_date:_Dec 5 2024;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_13.2
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#V3.30.23.2;_safe;_compile_date:_Apr 17 2025;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_13.2
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#C generic forecast file with no forecast
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# for all year entries except rebuilder; enter either: actual year, -999 for styr, 0 for endyr, neg number for rel. endyr
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1 # Benchmarks: 0=skip; 1=calc F_spr,F_btgt,F_msy; 2=calc F_spr,F0.1,F_msy; 3=add F_Blimit;

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