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Pull requests: opencobra/cobrapy

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Pull requests list

type hint changes in dictlist.py stale The issue or pull request lacks activity.
#1256 opened Jul 26, 2022 by akaviaLab Loading…
2 of 4 tasks
Add find_active_reactions.py to find active reactions quicker stale The issue or pull request lacks activity. WIP work in progress
#841 opened Apr 19, 2019 by shjchan Loading…
Consistent list annotation stale The issue or pull request lacks activity.
#959 opened Jun 4, 2020 by Hemant27031999 Loading…
initial attempt at compartments stale The issue or pull request lacks activity.
#1193 opened Mar 25, 2022 by akaviaLab Draft
Direct gene.id modification warning message.
#1424 opened Jan 13, 2025 by mdziurzynski Loading…
Fix 673 stale The issue or pull request lacks activity.
#1264 opened Aug 10, 2022 by akaviaLab Loading…
4 tasks done
User defined constraints stale The issue or pull request lacks activity.
#996 opened Aug 28, 2020 by Hemant27031999 Loading…
refactor: turn compartments into objects stale The issue or pull request lacks activity. WIP work in progress
#725 opened Jun 13, 2018 by Midnighter Loading…
add compare.py which contains functions for comparing. stale The issue or pull request lacks activity.
#1206 opened Apr 25, 2022 by akaviaLab Loading…
1 of 3 tasks
Metadata FBC3
#1440 opened Apr 29, 2025 by pascalaldo Loading…
feat: add embl gems repository stale The issue or pull request lacks activity.
#1282 opened Sep 20, 2022 by achillesrasquinha Loading…
4 tasks done
Metadata fbc3 stale The issue or pull request lacks activity.
#1237 opened Jun 19, 2022 by akaviaLab Loading…
1 task
feat: add repr to dictlist stale The issue or pull request lacks activity.
#1278 opened Sep 19, 2022 by achillesrasquinha Draft
2 of 4 tasks
C++-based CHRR implementation
#1453 opened Jul 4, 2025 by ripaul Loading…
3 of 4 tasks
Gap-filling multi-strain workflow cookbook Issues that could be converted to future entries in a cobrapy cookbook. stale The issue or pull request lacks activity.
#873 opened Jul 11, 2019 by yseif Loading…
feat: add progress to fva stale The issue or pull request lacks activity.
#1283 opened Sep 20, 2022 by achillesrasquinha Loading…
4 tasks done
Added fast gapfilling flag. All tests pass with fast_gapfill=True
#1450 opened Jun 27, 2025 by djinnome Loading…
5 tasks done
Metadata fbc3 group enhancement ready Finished PR that requires review and merge. stale The issue or pull request lacks activity.
#988 opened Aug 15, 2020 by Hemant27031999 Loading…
8 of 9 tasks
ProTip! What’s not been updated in a month: updated:<2026-01-24.