From 82f3408541b41615c573433889a2fa8dba9f1fe2 Mon Sep 17 00:00:00 2001
From: Robrecht Cannoodt <rcannood@gmail.com>
Date: Fri, 27 Jun 2025 18:13:47 +0200
Subject: [PATCH 1/2] more renames

---
 .../resource_scripts/openproblems_op3.sh      | 34 +++++++++----------
 .../config.vsh.yaml                           |  0
 .../main.nf                                   |  0
 3 files changed, 17 insertions(+), 17 deletions(-)
 rename src/datasets/workflows/scrnaseq/{process_op3 => process_openproblems_op3}/config.vsh.yaml (100%)
 rename src/datasets/workflows/scrnaseq/{process_op3 => process_openproblems_op3}/main.nf (100%)

diff --git a/src/datasets/resource_scripts/openproblems_op3.sh b/src/datasets/resource_scripts/openproblems_op3.sh
index a89ccd275..b07e621ac 100755
--- a/src/datasets/resource_scripts/openproblems_op3.sh
+++ b/src/datasets/resource_scripts/openproblems_op3.sh
@@ -26,7 +26,7 @@ output_hvg: force_null
 output_knn: force_null
 publish_dir: s3://openproblems-data/resources/datasets
 HERE
-<
+
 cat > "/tmp/nextflow.config" << 'HERE'
 process {
   withName:'.*publishStatesProc' {
@@ -36,20 +36,20 @@ process {
 }
 HERE
 
-# tw launch https://github.com/openproblems-bio/openproblems.git \
-#  --revision main_build \
-#  --pull-latest \
-#  --main-script target/nextflow/datasets/workflows/scrnaseq/process_openproblems_op3/main.nf \
-#  --workspace 53907369739130 \
-#  --params-file "$params_file" \
-#  --labels op3,dataset_loader \
-#  --config /tmp/nextflow.config
+tw launch https://github.com/openproblems-bio/openproblems.git \
+ --revision build/main \
+ --pull-latest \
+ --main-script target/nextflow/datasets/workflows/scrnaseq/process_openproblems_op3/main.nf \
+ --workspace 53907369739130 \
+ --params-file "$params_file" \
+ --labels op3,dataset_loader \
+ --config /tmp/nextflow.config
 
-set -x
-export AWS_PROFILE=op
-nextflow run . \
-  -main-script target/nextflow/datasets/workflows/scrnaseq/process_openproblems_op3/main.nf \
-  -profile docker \
-  -resume \
-  -params-file "$params_file" \
-  -config /tmp/nextflow.config
+# set -x
+# export AWS_PROFILE=op
+# nextflow run . \
+#   -main-script target/nextflow/datasets/workflows/scrnaseq/process_openproblems_op3/main.nf \
+#   -profile docker \
+#   -resume \
+#   -params-file "$params_file" \
+#   -config /tmp/nextflow.config
diff --git a/src/datasets/workflows/scrnaseq/process_op3/config.vsh.yaml b/src/datasets/workflows/scrnaseq/process_openproblems_op3/config.vsh.yaml
similarity index 100%
rename from src/datasets/workflows/scrnaseq/process_op3/config.vsh.yaml
rename to src/datasets/workflows/scrnaseq/process_openproblems_op3/config.vsh.yaml
diff --git a/src/datasets/workflows/scrnaseq/process_op3/main.nf b/src/datasets/workflows/scrnaseq/process_openproblems_op3/main.nf
similarity index 100%
rename from src/datasets/workflows/scrnaseq/process_op3/main.nf
rename to src/datasets/workflows/scrnaseq/process_openproblems_op3/main.nf

From a632102c228a690cc8199eb61532028204e6e859 Mon Sep 17 00:00:00 2001
From: Robrecht Cannoodt <rcannood@gmail.com>
Date: Tue, 29 Jul 2025 11:21:25 +0200
Subject: [PATCH 2/2] rename dir

---
 .../loaders/scrnaseq/{op3 => openproblems_op3}/config.vsh.yaml    | 0
 src/datasets/loaders/scrnaseq/{op3 => openproblems_op3}/script.py | 0
 src/datasets/loaders/scrnaseq/{op3 => openproblems_op3}/test.py   | 0
 3 files changed, 0 insertions(+), 0 deletions(-)
 rename src/datasets/loaders/scrnaseq/{op3 => openproblems_op3}/config.vsh.yaml (100%)
 rename src/datasets/loaders/scrnaseq/{op3 => openproblems_op3}/script.py (100%)
 rename src/datasets/loaders/scrnaseq/{op3 => openproblems_op3}/test.py (100%)

diff --git a/src/datasets/loaders/scrnaseq/op3/config.vsh.yaml b/src/datasets/loaders/scrnaseq/openproblems_op3/config.vsh.yaml
similarity index 100%
rename from src/datasets/loaders/scrnaseq/op3/config.vsh.yaml
rename to src/datasets/loaders/scrnaseq/openproblems_op3/config.vsh.yaml
diff --git a/src/datasets/loaders/scrnaseq/op3/script.py b/src/datasets/loaders/scrnaseq/openproblems_op3/script.py
similarity index 100%
rename from src/datasets/loaders/scrnaseq/op3/script.py
rename to src/datasets/loaders/scrnaseq/openproblems_op3/script.py
diff --git a/src/datasets/loaders/scrnaseq/op3/test.py b/src/datasets/loaders/scrnaseq/openproblems_op3/test.py
similarity index 100%
rename from src/datasets/loaders/scrnaseq/op3/test.py
rename to src/datasets/loaders/scrnaseq/openproblems_op3/test.py