diff --git a/CHANGELOG.md b/CHANGELOG.md index e3468069..ea87ef7a 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,6 +1,9 @@ # task_spatial_simulators dev Bug fixes: + - `srtsim`: install `shiny` and `shinyBS`, without which `library(SRTsim)` + fails on a missing `httpuv`. The method produced no results at all in + `run_2026-07-11_18-00-02`. - `run_benchmark`: raise `uns_length_cutoff` from 15 to 50, so that `extract_uns_metadata` no longer drops the `metric_ids` of components that emit more than 15 metrics. All 28 `ks_statistic_gene_cell` metrics were diff --git a/src/methods/srtsim/config.vsh.yaml b/src/methods/srtsim/config.vsh.yaml index 9864e83a..d6f6639d 100644 --- a/src/methods/srtsim/config.vsh.yaml +++ b/src/methods/srtsim/config.vsh.yaml @@ -21,7 +21,9 @@ engines: image: openproblems/base_r:1 setup: - type: r - cran: SRTsim + # shiny and shinyBS do not come along with SRTsim, which then fails to + # load with "there is no package called 'httpuv'" + cran: [SRTsim, shiny, shinyBS] runners: - type: executable