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    45 repositories

    • oncoPoS

      Public
      oncoPoS performs Probability of Success (PoS) calculations for a phase 3 oncology study using a Bayesian Hierarchical model. The prior in this model is based on…
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 12, 2026Mar 12, 2026

    • dynamicpv

      Public
      Evaluate present values and cost-effectiveness with dynamic pricing and uptake
      R
      •
      GNU General Public License v3.0
      •4•7•0•0•Updated Mar 11, 2026Mar 11, 2026

    • Dengue-outbreak-monitoring

      Public
      Code sampling using AI to monitor Dengue outbreaks
      PLpgSQL
      •0•0•0•0•Updated Mar 6, 2026Mar 6, 2026

    • ovo

      Public
      OVO, an open-source ecosystem for de novo protein design
      nextflowprotein-designde-novo
      nextflowprotein-designde-novobindcraftrfdiffusion
      Python
      •
      MIT License
      •22•113•9•1•Updated Feb 25, 2026Feb 25, 2026

    • helmify

      Public
      This project provides an overview and implementation of the work described in "HELMify: A Hybrid Rule- and LLM-Based Generator of Peptide Monomer HELM Names".
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 20, 2026Feb 20, 2026

    • teal-agents

      Public
      Python
      •
      Other
      •10•10•0•8•Updated Feb 20, 2026Feb 20, 2026

    • usevaxpmx

      Public
      R
      •0•2•0•0•Updated Feb 20, 2026Feb 20, 2026

    • ovo-containers

      Public
      Dockerfile
      •
      MIT License
      •1•2•0•1•Updated Feb 13, 2026Feb 13, 2026

    • ovo-examples

      Public
      Jupyter Notebook
      •
      MIT License
      •0•3•0•0•Updated Feb 12, 2026Feb 12, 2026

    • adp

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Jan 8, 2026Jan 8, 2026

    • General-PepMNet

      Public
      Generalization of PepMNet to allow for non-canonical amino acids and more complex peptide topologies
      Python
      •
      Other
      •1•0•0•0•Updated Jan 5, 2026Jan 5, 2026

    • py-pkglite

      Public
      A simple framework for packing source packages written in any programming language into a text file and restoring them into the original directory structure
      Python
      •
      MIT License
      •2•0•0•0•Updated Jan 2, 2026Jan 2, 2026

    • AnNoBrainer

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 2, 2026Jan 2, 2026

    • ovo-proteindj

      Public
      Python
      •
      MIT License
      •1•1•0•1•Updated Dec 19, 2025Dec 19, 2025

    • MRL-MC-Retention

      Public
      Repository for multiple condition retention time modeling (MC-Retention) and Multiple Condition adjusted Retention Time (MCaRT) dataset.
      Python
      •
      Other
      •2•1•0•0•Updated Dec 17, 2025Dec 17, 2025

    • IBMDPDesigns.jl

      Public
      Sequential planning of experimental designs under resource and target constraints.
      Julia
      •
      Other
      •1•0•0•0•Updated Dec 11, 2025Dec 11, 2025

    • miRQuest

      Public
      An RShiny app for the analysis of high-throughput miRNA sequencing data
      R
      •
      Other
      •1•0•0•0•Updated Dec 11, 2025Dec 11, 2025

    • ovo-promb

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Dec 8, 2025Dec 8, 2025

    • InCytokine

      Public
      The Cytokine Array Assay is an automated image analysis tool designed to process cytokine array images and extract quantitative data from them. This tool analyz…
      Python
      •
      MIT License
      •0•1•0•0•Updated Dec 1, 2025Dec 1, 2025

    • eligmodel

      Public
      This package focuses about analyzing real-world data patients by clinical trial eligibility status (eligible, ineligible, or unknown due to missing data) and it…
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Nov 25, 2025Nov 25, 2025

    • MGtree

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Nov 25, 2025Nov 25, 2025

    • obsidian

      Public
      Algorithmic process optimization and AI experiment design
      optimizationbayesian-optimizationactive-learning
      optimizationbayesian-optimizationactive-learningprocess-design
      Python
      •
      GNU General Public License v3.0
      •8•44•12•4•Updated Nov 21, 2025Nov 21, 2025

    • PepThink-R1

      Public
      LLM for Interpretable Cyclic Peptide Optimization with CoT SFT and Reinforcement Learning
      Jupyter Notebook
      •
      Other
      •1•3•2•0•Updated Nov 18, 2025Nov 18, 2025

    • cpk

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Nov 14, 2025Nov 14, 2025

    • kmcurvely

      Public
      R
      •
      GNU General Public License v3.0
      •0•2•6•0•Updated Oct 29, 2025Oct 29, 2025

    • stan_hbm

      Public
      This code may accompany the publication of papers on HBM for basket trials.
      R
      •
      MIT License
      •0•1•0•0•Updated Sep 9, 2025Sep 9, 2025

    • DSSI-IDA-GraphTox

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Sep 5, 2025Sep 5, 2025

    • DRAGoN

      Public
      DRUG-seq (Digital RNA with pertUrbation of Genes) [1] is a new technique that provides a cost-effective way for high-throughput, whole transcriptome RNA-seq pro…
      Python
      •
      MIT License
      •2•8•1•1•Updated Sep 4, 2025Sep 4, 2025

    • QComp

      Public
      A robust, interpretable, non-iterative data completion framework for sparse datasets in drug discovery.
      Jupyter Notebook
      •
      Other
      •3•3•0•0•Updated Aug 11, 2025Aug 11, 2025

    • promb

      Public
      Humanness of de-novo designed proteins
      Jupyter Notebook
      •
      MIT License
      •7•41•3•1•Updated May 19, 2025May 19, 2025