From 2bdb4fc293f928033bd2968f2cf53d2a146a8762 Mon Sep 17 00:00:00 2001
From: efmanu <manuedavakandam@gmail.com>
Date: Sun, 4 Jul 2021 04:49:02 +1000
Subject: [PATCH 1/3] unit tests

---
 Manifest.toml    | 288 +++++++++++++++++++++++++++++++++++++++++++++++
 Project.toml     |   4 +-
 test/runtests.jl | 102 +++++++++++++++++
 3 files changed, 392 insertions(+), 2 deletions(-)
 create mode 100644 Manifest.toml
 create mode 100644 test/runtests.jl

diff --git a/Manifest.toml b/Manifest.toml
new file mode 100644
index 0000000..91bb4d9
--- /dev/null
+++ b/Manifest.toml
@@ -0,0 +1,288 @@
+# This file is machine-generated - editing it directly is not advised
+
+[[ArgTools]]
+uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
+
+[[Artifacts]]
+uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
+
+[[Base64]]
+uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
+
+[[CodecZlib]]
+deps = ["TranscodingStreams", "Zlib_jll"]
+git-tree-sha1 = "ded953804d019afa9a3f98981d99b33e3db7b6da"
+uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
+version = "0.7.0"
+
+[[Compat]]
+deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"]
+git-tree-sha1 = "dc7dedc2c2aa9faf59a55c622760a25cbefbe941"
+uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
+version = "3.31.0"
+
+[[Dash]]
+deps = ["CodecZlib", "DashBase", "DashCoreComponents", "DashHtmlComponents", "DashTable", "DataStructures", "HTTP", "JSON", "JSON2", "MD5", "PlotlyBase", "Sockets", "Test", "UUIDs"]
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+version = "0.1.0"
+
+[[DashCoreComponents]]
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+
+[[DashHtmlComponents]]
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+
+[[DashTable]]
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+
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+
+[[Distributed]]
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+[[Downloads]]
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+uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
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+[[HTTP]]
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+
+[[LibCURL_jll]]
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+uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
+
+[[LibGit2]]
+deps = ["Base64", "NetworkOptions", "Printf", "SHA"]
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+
+[[LibSSH2_jll]]
+deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
+uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"
+
+[[Libdl]]
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+
+[[LinearAlgebra]]
+deps = ["Libdl"]
+uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
+
+[[Logging]]
+uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
+
+[[MD5]]
+deps = ["Random", "SHA"]
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+version = "0.2.1"
+
+[[Markdown]]
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+uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
+
+[[MbedTLS]]
+deps = ["Dates", "MbedTLS_jll", "Random", "Sockets"]
+git-tree-sha1 = "1c38e51c3d08ef2278062ebceade0e46cefc96fe"
+uuid = "739be429-bea8-5141-9913-cc70e7f3736d"
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+
+[[MbedTLS_jll]]
+deps = ["Artifacts", "Libdl"]
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+
+[[Mmap]]
+uuid = "a63ad114-7e13-5084-954f-fe012c677804"
+
+[[MozillaCACerts_jll]]
+uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
+
+[[NetworkOptions]]
+uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
+
+[[OrderedCollections]]
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+
+[[PlotlyBase]]
+deps = ["Base64", "Dates", "DelimitedFiles", "DocStringExtensions", "JSON", "Kaleido_jll", "LaTeXStrings", "Logging", "Pkg", "REPL", "Requires", "Statistics", "UUIDs"]
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+uuid = "a03496cd-edff-5a9b-9e67-9cda94a718b5"
+version = "0.5.4"
+
+[[Preferences]]
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+uuid = "21216c6a-2e73-6563-6e65-726566657250"
+version = "1.2.2"
+
+[[Printf]]
+deps = ["Unicode"]
+uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
+
+[[REPL]]
+deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
+uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
+
+[[Random]]
+deps = ["Serialization"]
+uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
+
+[[Requires]]
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+version = "1.1.3"
+
+[[SHA]]
+uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
+
+[[Serialization]]
+uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
+
+[[SharedArrays]]
+deps = ["Distributed", "Mmap", "Random", "Serialization"]
+uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383"
+
+[[Sockets]]
+uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
+
+[[SparseArrays]]
+deps = ["LinearAlgebra", "Random"]
+uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
+
+[[Statistics]]
+deps = ["LinearAlgebra", "SparseArrays"]
+uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
+
+[[TOML]]
+deps = ["Dates"]
+uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
+
+[[Tar]]
+deps = ["ArgTools", "SHA"]
+uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"
+
+[[Test]]
+deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
+uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+
+[[TranscodingStreams]]
+deps = ["Random", "Test"]
+git-tree-sha1 = "7c53c35547de1c5b9d46a4797cf6d8253807108c"
+uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
+version = "0.9.5"
+
+[[URIs]]
+git-tree-sha1 = "97bbe755a53fe859669cd907f2d96aee8d2c1355"
+uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
+version = "1.3.0"
+
+[[UUIDs]]
+deps = ["Random", "SHA"]
+uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
+
+[[Unicode]]
+uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
+
+[[Zlib_jll]]
+deps = ["Libdl"]
+uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
+
+[[nghttp2_jll]]
+deps = ["Artifacts", "Libdl"]
+uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
+
+[[p7zip_jll]]
+deps = ["Artifacts", "Libdl"]
+uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
diff --git a/Project.toml b/Project.toml
index 74466cd..35ee269 100644
--- a/Project.toml
+++ b/Project.toml
@@ -1,4 +1,3 @@
-
 name = "DashBio"
 uuid = "1b08a953-4be3-4667-9a23-39d4b6b31131"
 authors = ["The Plotly Team <dashbio@plotly.com>"]
@@ -6,7 +5,8 @@ version = "0.7.0"
 
 [deps]
 Dash = "1b08a953-4be3-4667-9a23-3db579824955"
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
 [compat]
-julia = "1.2"
 Dash = "0.1.3"
+julia = "1.2"
diff --git a/test/runtests.jl b/test/runtests.jl
new file mode 100644
index 0000000..d77f29d
--- /dev/null
+++ b/test/runtests.jl
@@ -0,0 +1,102 @@
+using Test, DashBio
+
+@testset "Alignment Chart" begin
+  alchart = dashbio_alignmentchart(
+         id="my-dashbio-alignmentchart"
+  )
+  @test getfield(alchart, :name) == "dashbio_alignmentchart"
+  @test alchart isa DashBio.DashBase.Component
+  @test alchart.id == "my-dashbio-alignmentchart"
+end
+@testset "Forna Container" begin
+  fc = dashbio_fornacontainer(
+    id="my-dashbio-fornacontainer"
+  )
+  @test getfield(fc, :name) == "dashbio_fornacontainer"
+  @test fc isa DashBio.DashBase.Component
+  @test fc.id == "my-dashbio-fornacontainer"
+end
+@testset "Ideogram" begin
+  ig =  dashbio_ideogram(
+    id="my-dashbio-ideogram",
+    chrHeight=250
+  )
+  @test getfield(ig, :name) == "dashbio_ideogram"
+  @test ig isa DashBio.DashBase.Component
+  @test ig.id == "my-dashbio-ideogram"
+  @test ig.chrHeight == 250
+end
+@testset "Igv" begin
+  igv =  dashbio_igv(
+    id="my-dashbio-igv",
+    genome="ce11",
+    minimumBases=100,
+    locus="chrV"
+  )
+  @test getfield(igv, :name) == "dashbio_igv"
+  @test igv isa DashBio.DashBase.Component
+  @test igv.id == "my-dashbio-igv"
+  @test igv.genome == "ce11"
+  @test igv.minimumBases == 100
+  @test igv.locus == "chrV"
+end
+@testset "Molecule 2d Viewer" begin
+  m2v =  dashbio_molecule2dviewer(
+    id="my-dashbio-molecule2dviewer"
+  )
+  @test getfield(m2v, :name) == "dashbio_molecule2dviewer"
+  @test m2v isa DashBio.DashBase.Component
+  @test m2v.id == "my-dashbio-molecule2dviewer"
+end
+@testset "Molecule 3d Viewer" begin
+  m3v =  dashbio_molecule3dviewer(
+    id="my-dashbio-molecule3dviewer",
+    backgroundOpacity=0
+  )
+  @test getfield(m3v, :name) == "dashbio_molecule3dviewer"
+  @test m3v isa DashBio.DashBase.Component
+  @test m3v.id == "my-dashbio-molecule3dviewer"
+  @test m3v.backgroundOpacity == 0
+end
+@testset "Needle Plot" begin
+  np =  dashbio_needleplot(
+    id="my-dashbio-needleplot"
+  )
+  @test getfield(np, :name) == "dashbio_needleplot"
+  @test np isa DashBio.DashBase.Component
+  @test np.id == "my-dashbio-needleplot"
+end
+@testset "Ngl Molecule Viewer" begin
+  nmv =  dashbio_nglmoleculeviewer(
+    id="nglmoleculeviewer"
+  )
+  @test getfield(nmv, :name) == "dashbio_nglmoleculeviewer"
+  @test nmv isa DashBio.DashBase.Component
+  @test nmv.id == "nglmoleculeviewer"
+end
+@testset "Onco Print" begin
+  op =  dashbio_oncoprint(
+    id="my-dashbio-oncoprint"
+  )
+  @test getfield(op, :name) == "dashbio_oncoprint"
+  @test op isa DashBio.DashBase.Component
+  @test op.id == "my-dashbio-oncoprint"
+end
+@testset "Sequence Viewer" begin
+  sv =  dashbio_sequenceviewer(
+    id="my-dashbio-sequenceviewer"
+  )
+  @test getfield(sv, :name) == "dashbio_sequenceviewer"
+  @test sv isa DashBio.DashBase.Component
+  @test sv.id == "my-dashbio-sequenceviewer"
+end
+@testset "Speck" begin
+  sp =  dashbio_speck(
+    id="my-dashbio-speck",
+    view=Dict("resolution" => 600)
+  )
+  @test getfield(sp, :name) == "dashbio_speck"
+  @test sp isa DashBio.DashBase.Component
+  @test sp.id == "my-dashbio-speck"
+  @test sp.view == Dict("resolution" => 600)
+end
\ No newline at end of file

From 34da906d8d0579975cad23ea1f9bc4e16cdb2b51 Mon Sep 17 00:00:00 2001
From: efmanu <manuedavakandam@gmail.com>
Date: Sun, 4 Jul 2021 16:46:44 +1000
Subject: [PATCH 2/3] readme

---
 README.md | 73 ++++++++++++++++++++++++++++++++++++++++++++++---------
 1 file changed, 61 insertions(+), 12 deletions(-)

diff --git a/README.md b/README.md
index f82ee56..115c800 100644
--- a/README.md
+++ b/README.md
@@ -1,6 +1,7 @@
 # Dash Bio
-[![CircleCI](https://circleci.com/gh/plotly/dash-bio/tree/master.svg?style=svg)](https://circleci.com/gh/plotly/dash-bio)
-[![PyPI version](https://badge.fury.io/py/dash-bio.svg)](https://badge.fury.io/py/dash-bio)
+[docs-dev-img]: https://img.shields.io/badge/docs-dev-blue.svg
+[docs-dev-url]: https://dash-julia.plotly.com/dash_bio
+[![][docs-dev-img]][docs-dev-url]
 
 Dash Bio is a suite of bioinformatics components built to work with
 [Dash](https://github.com/plotly/dash/).
@@ -10,8 +11,62 @@ Announcement: https://medium.com/@plotlygraphs/announcing-dash-bio-ed8835d5da0c
 Demo:
 [https://dash-gallery.plotly.host/Portal/?search=Bioinformatics](https://dash-gallery.plotly.host/Portal/?search=Bioinformatics)
 
-Documentation:
-[https://dash.plotly.com/dash-bio](https://dash.plotly.com/dash-bio)
+## Installation
+
+```julia    
+    using Pkg
+    Pkg.add("DashBio")
+```
+## Installation in development mode
+
+```julia    
+    (v1.6) pkg> dev DashBio
+```
+## Install specific version
+
+```julia    
+    using Pkg
+    Pkg.add(name="DashBio", version="0.1.0")
+```
+## Test
+
+You can run unit test for `DashBio.jl` as:
+
+```julia    
+    using Pkg
+    Pkg.test("DashBio")
+```
+
+## Issues
+Report issues related to `DashBio.jl` at [https://github.com/plotly/DashBio.jl/issues](https://github.com/plotly/DashBio.jl/issues)
+
+
+## Documentation
+Component API documentation can be found at https://dash-julia.plotly.com/dash_bio
+
+
+### Basic Example
+
+A switch component that toggles between on and off can be implemented using `DashDaq.jl` as:
+
+```julia
+using Dash, DashBio
+
+app = dash()
+
+app.layout = daq_booleanswitch(
+  id="my-daq-booleanswitch",
+  on=true
+)  
+run_server(app, "0.0.0.0", debug=true)
+```
+
+## Uninstall `DashDaq.jl`
+
+```julia    
+    using Pkg
+    Pkg.rm("DashBio")
+```
 
 ## Components
 
@@ -24,11 +79,8 @@ The Dash Bio components each fall into one of three categories:
 
 ### Custom chart types
 
-- Dash Circos
 - Dash Clustergram
-- Dash Manhattan Plot
 - Dash Needle Plot
-- Dash Volcano Plot
 
 ### Sequence analysis tools
 
@@ -51,12 +103,9 @@ Learn more about Dash at
 
 ## Consulting and OEM
 
-For inquiries about Dash app development, advanced OEM integration,
-and more, please [reach
-out](https://plotly.typeform.com/to/mH1Cpb).
+For inquiries about Dash app development, advanced OEM integration, and more, please [reach out](https://plotly.typeform.com/to/mH1Cpb).
 
 ## Contributing
 
 If you would like to contribute to this repository, please refer to
-the [contributing
-guidelines](https://github.com/plotly/dash-bio/blob/master/CONTRIBUTING.md).
+the [contributing guidelines](https://github.com/plotly/dash-bio/blob/master/CONTRIBUTING.md).

From 3952b589585dfd1a6a6aa0331de6d55ead5bfc97 Mon Sep 17 00:00:00 2001
From: efmanu <manuedavakandam@gmail.com>
Date: Sun, 4 Jul 2021 16:49:30 +1000
Subject: [PATCH 3/3] readme

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index 115c800..32abfca 100644
--- a/README.md
+++ b/README.md
@@ -61,7 +61,7 @@ app.layout = daq_booleanswitch(
 run_server(app, "0.0.0.0", debug=true)
 ```
 
-## Uninstall `DashDaq.jl`
+## Uninstall `DashBio.jl`
 
 ```julia    
     using Pkg