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Merge pull request #12 from pughlab/yzeng-lol-patch-1-1
Update Troubleshooting.md
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assets/Troubleshooting.md

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@@ -11,7 +11,7 @@ INFO: activate-gfortran_linux-64.sh made the following environmental changes:
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```
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## Missing input files for rule merge_and_rename_fq_se
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You might come across above error even you spcified your input reads are pair-end. This might be due to your modified sample_template.tsv file is not tab-delimited or with duplicated sample_id. Fix that will allow the pipeline get throught.
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You might come across above error even you spcified your input reads are pair-end. This might be due to your modified sample_template.tsv file is **not tab-delimited** or **with duplicated sample_id**. Fix that will allow the pipeline get throught.
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## Could not create conda environment from umi_tools.yaml
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AttributeError: "str' object has no attribute "name'
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```
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This issure could be fix by "conda install tabulate=0.8.10", more details refer to snakemake issue [1892](https://github.com/snakemake/snakemake/issues/1892)
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## Issue for installing mamba
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You might encounter the issue when you intall the mamaba with your connda version. Downgrading your mamba to 1.#.# versions might fix it. The version used for building the pipeline is v0.15.3.

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